This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.290485 (85 seq.)
>W131090187
AOFT01000003
Bacillota
Bhargavaea cecembensis DSE10 [AOFT]
201767
201693
-
Lys
TTT
[ENA]
¡û
>W1711507290
MKXO01000008
Bacillota
Exiguobacterium aurantiacum [MKXO]
53612
53687
+
Lys
TTT
[ENA]
¡û
>W1711507299
MKXO01000010
Bacillota
Exiguobacterium aurantiacum [MKXO]
51582
51507
-
Lys
TTT
[ENA]
¡û
>W1711507311
MKXO01000020
Bacillota
Exiguobacterium aurantiacum [MKXO]
692
767
+
Lys
TTT
[ENA]
¡û
>W1711589683
MOEL01000020
Bacillota
Exiguobacterium sp. AT1b [MOEL]
7761
7836
+
Lys
TTT
[ENA]
¡û
>W1711713083
MTCT01000004
Bacillota
Exiguobacterium sp. HVEsp1 [MTCT]
314287
314362
+
Lys
TTT
[ENA]
¡û
>W1711766979
MUZD01000014
Bacillota
Sedimentibacter sp. SX930 [MUZD]
45332
45258
-
Lys
TTT
[ENA]
¡û
>W1711766989
MUZD01000021
Bacillota
Sedimentibacter sp. SX930 [MUZD]
2115
2043
-
Lys
TTT
[ENA]
¡û
>W1711767010
MUZD01000024
Bacillota
Sedimentibacter sp. SX930 [MUZD]
1198
1124
-
Lys
TTT
[ENA]
¡û
>W1711767050
MUZD01000035
Bacillota
Sedimentibacter sp. SX930 [MUZD]
128
54
-
Lys
TTT
[ENA]
¡û
>W1711767052
MUZD01000037
Bacillota
Sedimentibacter sp. SX930 [MUZD]
132
204
+
Lys
TTT
[ENA]
¡û
>C171094264
CP019433
Bacillota
Jeotgalibaca sp. PTS2502 [CP019433]
494125
494199
+
Lys
TTT
-
¡û
>C171094284
CP019433
Bacillota
Jeotgalibaca sp. PTS2502 [CP019433]
1746818
1746892
+
Lys
TTT
-
¡û
>C171094310
CP019433
Bacillota
Jeotgalibaca sp. PTS2502 [CP019433]
1829312
1829386
+
Lys
TTT
-
¡û
>W131090192
AOFT01000012
Bacillota
Bhargavaea cecembensis DSE10 [AOFT]
444
519
+
Lys
TTT
[ENA]
¡û
>W131090232
AOFT01000027
Bacillota
Bhargavaea cecembensis DSE10 [AOFT]
484
409
-
Lys
TTT
[ENA]
¡û
>W131090238
AOFT01000037
Bacillota
Bhargavaea cecembensis DSE10 [AOFT]
433
508
+
Lys
TTT
[ENA]
¡û
>W131205129
ATCL01000018
Bacillota
Exiguobacterium chiriqhucha RW2 [ATCL]
288
213
-
Lys
TTT
[ENA]
¡û
>W131226221
AUEE01000010
Bacillota
Jeotgalicoccus marinus DSM 19772 [AUEE]
94910
94838
-
Lys
TTT
[ENA]
¡û
>WENV180284083
OBID01015203
[OBID] metagenome; sludge
1883
1809
-
Lys
TTT
[ENA]
¢þ
>WENV180310759
OBJT01022307
[OBJT] soil metagenome; soil
2
76
+
Lys
TTT
[ENA]
¢þ
>W141072942
ASQA01000033
Bacillota
Viridibacillus arenosi FSL R5-213 [ASQA]
514
439
-
Lys
TTT
[ENA]
¡û
>WENV181168175
OEIU01188127
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
146
220
+
Lys
TTT
[ENA]
¢þ
>WENV181371692
OFQV01046995
[OFQV] wastewater metagenome; WWTP Cannobio (Effluent)
443
517
+
Lys
TTT
[ENA]
¢þ
>W08009391
ABPF01000001
Bacillota
Exiguobacterium sp. AT1b [ABPF]
340717
340792
+
Lys
TTT
[ENA]
¡û
>W141426059
JEMH01000053
Bacillota
Carnobacterium jeotgali [JEMH]
7295
7221
-
Lys
TTT
[ENA]
¡û
>WENV170553924
CXWK01038173
[CXWK] wastewater metagenome; activated sludge
244
318
+
Lys
TTT
[ENA]
¢þ
>WENV170700255
LIDZ01009968
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
6259
6185
-
Lys
TTT
[ENA]
¢þ
>C191126008
CP034465
Bacillota
Jeotgalibaca ciconiae H21T32 [CP034465]
2865943
2865869
-
Lys
TTT
-
¡û
>C191126031
CP034465
Bacillota
Jeotgalibaca ciconiae H21T32 [CP034465]
1273561
1273487
-
Lys
TTT
-
¡û
>C191126058
CP034465
Bacillota
Jeotgalibaca ciconiae H21T32 [CP034465]
1203284
1203210
-
Lys
TTT
-
¡û
>C191181504
CP040676
Bacillota
Exiguobacterium mexicanum A-EM [CP040676]
2292678
2292603
-
Lys
TTT
-
¡û
>W141563101
JHZT01000001
Bacillota
Exiguobacterium marinum DSM 16307 [JHZT]
132141
132066
-
Lys
TTT
[ENA]
¡û
>W141620200
JJMW01000037
Bacillota
Exiguobacterium alkaliphilum 12·î1Æü [JJMW]
302
227
-
Lys
TTT
[ENA]
¡û
>W141726074
JNAA01000095
Bacillota
Exiguobacterium sp. AB2 [JNAA]
375
300
-
Lys
TTT
[ENA]
¡û
>W141730811
JNIP01000001
Bacillota
Exiguobacterium chiriqhucha GIC31 [JNIP]
2547837
2547762
-
Lys
TTT
[ENA]
¡û
>W141730895
JNIQ01000001
Bacillota
Exiguobacterium aurantiacum DSM 6208 [JNIQ]
130327
130252
-
Lys
TTT
[ENA]
¡û
>W141807093
JPOD01000004
Bacillota
Exiguobacterium sp. NG55 [JPOD]
352464
352539
+
Lys
TTT
[ENA]
¡û
>W1910442012
FWEY01000005
Bacillota
Trichococcus pasteurii [FWEY]
136507
136581
+
Lys
TTT
[ENA]
¡û
>C09106134
CP001615
Bacillota
Exiguobacterium sp. AT1b [CP001615]
2030941
2031016
+
Lys
TTT
[Ensembl]
¡û
>SRA1004626
SRR006906.88805
metagenomic water samples (SRP000427)
82
7
-
Lys
TTT
[SRA]
>W1810477043
QAOM01000022
Bacillota
Trichococcus patagoniensis DSM 18806 [QAOM]
41174
41100
-
Lys
TTT
[ENA]
¡û
>W1810823251
QSGS01000004
Bacillota
Exiguobacterium sp. AM39-5BH [QSGS]
232436
232511
+
Lys
TTT
[ENA]
¡û
>W1810823256
QSGS01000007
Bacillota
Exiguobacterium sp. AM39-5BH [QSGS]
151105
151031
-
Lys
TTT
[ENA]
¡û
>W1810823285
QSGS01000035
Bacillota
Exiguobacterium sp. AM39-5BH [QSGS]
864
939
+
Lys
TTT
[ENA]
¡û
>W1511325266
JQGI01000002
Bacillota
Exiguobacterium mexicanum HUD [JQGI]
355639
355714
+
Lys
TTT
[ENA]
¡û
>W1511403365
JTLB01000009
Bacillota
Exiguobacterium sp. ZOR0005 [JTLB]
44441
44516
+
Lys
TTT
[ENA]
¡û
>W1511403383
JTLB01000040
Bacillota
Exiguobacterium sp. ZOR0005 [JTLB]
275
349
+
Lys
TTT
[ENA]
¡û
>W1511403390
JTLB01000042
Bacillota
Exiguobacterium sp. ZOR0005 [JTLB]
635
560
-
Lys
TTT
[ENA]
¡û
>W1511638517
LDNY01000002
Bacillota
Exiguobacterium sp. JLM-2 [LDNY]
341465
341540
+
Lys
TTT
[ENA]
¡û
>W1511638521
LDNY01000002
Bacillota
Exiguobacterium sp. JLM-2 [LDNY]
341925
342000
+
Lys
TTT
[ENA]
¡û
>W1610434070
FJMZ01000023
Bacillota
Trichococcus flocculiformis [FJMZ]
37713
37639
-
Lys
TTT
[ENA]
¡û
>W1610434096
FJMZ01000029
Bacillota
Trichococcus flocculiformis [FJMZ]
584
658
+
Lys
TTT
[ENA]
¡û
>W1610434103
FJMZ01000070
Bacillota
Trichococcus flocculiformis [FJMZ]
4159
4085
-
Lys
TTT
[ENA]
¡û
>W1610434134
FJMZ01000082
Bacillota
Trichococcus flocculiformis [FJMZ]
1806
1732
-
Lys
TTT
[ENA]
¡û
>W1610434201
FJNA01000002
Bacillota
Trichococcus collinsii [FJNA]
574997
575071
+
Lys
TTT
[ENA]
¡û
>W1610434283
FJNB01000021
Bacillota
Trichococcus ilyis R210 [FJNB]
533
607
+
Lys
TTT
[ENA]
¡û
>W1610434290
FJNB01000029
Bacillota
Trichococcus ilyis R210 [FJNB]
4722
4796
+
Lys
TTT
[ENA]
¡û
>W1610434354
FJND01000018
Bacillota
Trichococcus sp. ES5 [FJND]
465
539
+
Lys
TTT
[ENA]
¡û
>W1610434396
FJNE01000002
Bacillota
Trichococcus palustris [FJNE]
506830
506756
-
Lys
TTT
[ENA]
¡û
>W1610434430
FJNE01000004
Bacillota
Trichococcus palustris [FJNE]
237095
237171
+
Lys
TTT
[ENA]
¡û
>W1610521241
JMEH01000007
Bacillota
Exiguobacterium chiriqhucha pavilionensis [JMEH]
343080
343155
+
Lys
TTT
[ENA]
¡û
>W1610856303
LQNT01000001
Bacillota
Bhargavaea cecembensis [LQNT]
443
518
+
Lys
TTT
[ENA]
¡û
>W1610856327
LQNT01000005
Bacillota
Bhargavaea cecembensis [LQNT]
429
504
+
Lys
TTT
[ENA]
¡û
>W1610856342
LQNT01000011
Bacillota
Bhargavaea cecembensis [LQNT]
274271
274197
-
Lys
TTT
[ENA]
¡û
>W1610856345
LQNT01000011
Bacillota
Bhargavaea cecembensis [LQNT]
600
525
-
Lys
TTT
[ENA]
¡û
>W1710433806
FJMZ01000023
Bacillota
Trichococcus flocculiformis [FJMZ]
37713
37639
-
Lys
TTT
[ENA]
¡û
>W1710433832
FJMZ01000029
Bacillota
Trichococcus flocculiformis [FJMZ]
584
658
+
Lys
TTT
[ENA]
¡û
>W1710433839
FJMZ01000070
Bacillota
Trichococcus flocculiformis [FJMZ]
4159
4085
-
Lys
TTT
[ENA]
¡û
>W1710433870
FJMZ01000082
Bacillota
Trichococcus flocculiformis [FJMZ]
1806
1732
-
Lys
TTT
[ENA]
¡û
>W1710433937
FJNA01000002
Bacillota
Trichococcus collinsii [FJNA]
574997
575071
+
Lys
TTT
[ENA]
¡û
>W1710434019
FJNB01000021
Bacillota
Trichococcus ilyis R210 [FJNB]
533
607
+
Lys
TTT
[ENA]
¡û
>W1710434026
FJNB01000029
Bacillota
Trichococcus ilyis R210 [FJNB]
4722
4796
+
Lys
TTT
[ENA]
¡û
>W1710434090
FJND01000018
Bacillota
Trichococcus sp. ES5 [FJND]
465
539
+
Lys
TTT
[ENA]
¡û
>W1710434132
FJNE01000002
Bacillota
Trichococcus palustris [FJNE]
506830
506756
-
Lys
TTT
[ENA]
¡û
>W1710434166
FJNE01000004
Bacillota
Trichococcus palustris [FJNE]
237095
237171
+
Lys
TTT
[ENA]
¡û
>W1710514091
FNAR01000001
Bacillota
Bhargavaea beijingensis [FNAR]
249581
249655
+
Lys
TTT
[ENA]
¡û
>W1710514096
FNAR01000017
Bacillota
Bhargavaea beijingensis [FNAR]
786
711
-
Lys
TTT
[ENA]
¡û
>W1710514127
FNAR01000042
Bacillota
Bhargavaea beijingensis [FNAR]
82
157
+
Lys
TTT
[ENA]
¡û
>W1710563930
FOQC01000023
Bacillota
Trichococcus flocculiformis [FOQC]
36702
36628
-
Lys
TTT
[ENA]
¡û
>W1710584618
FQVR01000039
Bacillota
Trichococcus flocculiformis [FQVR]
13687
13613
-
Lys
TTT
[ENA]
¡û
>W1710608750
FXBJ01000002
Bacillota
Carnobacterium iners [FXBJ]
483368
483294
-
Lys
TTT
[ENA]
¡û
>W1710608764
FXBJ01000002
Bacillota
Carnobacterium iners [FXBJ]
406186
406114
-
Lys
TTT
[ENA]
¡û
>W1710608767
FXBJ01000002
Bacillota
Carnobacterium iners [FXBJ]
57141
57067
-
Lys
TTT
[ENA]
¡û
>W1710619721
JMEH01000007
Bacillota
Exiguobacterium chiriqhucha pavilionensis [JMEH]
343080
343155
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK