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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.290488 (32 seq.)
>W1710805045
LJZR01000027
Cyanobacteriota
Phormidesmis priestleyi Ana [LJZR]
13234
13309
+
Pseudo
CAT
[ENA]
¡û
>W1710882440
LMTZ01000002
Cyanobacteriota
Mastigocoleus testarum BC008 [LMTZ]
159565
159637
+
Met
CAT
[ENA]
¡û
>W1710882494
LMTZ01000159
Cyanobacteriota
Mastigocoleus testarum BC008 [LMTZ]
39277
39205
-
Met
CAT
[ENA]
¡û
>W131036284
ALVM01000010
Cyanobacteriota
Leptolyngbya boryana PCC 6306 [ALVM]
2122381
2122453
+
Met
CAT
[ENA]
¡û
>W131036410
ALVP01000012
Cyanobacteriota
Nodosilinea nodulosa PCC 7104 [ALVP]
290645
290717
+
Met
CAT
[ENA]
¡û
>W131166649
ARCP01000033
Cyanobacteriota
filamentous cyanobacterium ESFC-1 [ARCP]
22630
22703
+
Met
CAT
[ENA]
¡û
>C171000049
AP014638
Cyanobacteriota
Leptolyngbya boryana IAM M-101 [AP014638]
3997897
3997825
-
Met
CAT
-
¡û
>C171000112
AP014642
Cyanobacteriota
Leptolyngbya boryana dg5 [AP014642]
3997897
3997825
-
Met
CAT
-
¡û
>WENV181233874
OFET01000184
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
62036
61964
-
Ile2
CAT
[ENA]
¢þ
>W141139160
AWNH01000071
Cyanobacteriota
Leptolyngbya sp. Heron Island J [AWNH]
148655
148583
-
Met
CAT
[ENA]
¡û
>WENV181414113
OGCL01000020
[OGCL] hot springs metagenome; Hot spring water
48728
48800
+
Ile2
CAT
[ENA]
¢þ
>W141150818
AXAQ01000043
Cyanobacteriota
Mastigocoleus testarum BC008 [AXAQ]
37344
37272
-
Met
CAT
[ENA]
¡û
>W08010883
ABRV01000028
Cyanobacteriota
Synechococcus sp. PCC 7335 [ABRV]
103969
103897
-
Met
CAT
[ENA]
¡û
>W08011527
ABVJ01000003
Cyanobacteriota
Cyanothece sp. PCC 7425 [ABVJ]
268395
268322
-
Met
CAT
[ENA]
¡û
>WENV183748607
PPFU01059374
[PPFU] hypolithon metagenome; Antarctic Hypolithon
5323
5250
-
Ile2
CAT
[ENA]
¢þ
>WENV170996071
MWWF01136389
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
275
347
+
Met
CAT
[ENA]
¢þ
>C181004818
AP018203
Cyanobacteriota
Leptolyngbya boryana NIES-2135 [AP018203]
2937850
2937922
+
Met
CAT
-
¡û
>C09103608
CP001344
Cyanobacteriota
Cyanothece sp. PCC 7425 [CP001344]
261739
261666
-
Met
CAT
[Ensembl]
¡û
>W1910976643
NKFP01000004
Cyanobacteriota
Leptolyngbya ohadii IS1 [NKFP]
271956
272029
+
Met
CAT
[ENA]
¡û
>W1911219929
NRTA01000010
Cyanobacteriota
Leptolyngbya sp. BC1307 [NRTA]
68064
68136
+
Met
CAT
[ENA]
¡û
>W1810366204
PVWD01000260
Cyanobacteriota
filamentous cyanobacterium CCP2 [PVWD]
1724
1797
+
Met
CAT
[ENA]
¡û
>W1810398639
PYER01000197
Cyanobacteriota
filamentous cyanobacterium CCT1 [PYER]
11019
11091
+
Met
CAT
[ENA]
¡û
>W1810400267
PYFY01000674
Cyanobacteriota
filamentous cyanobacterium CCP4 [PYFY]
1102
1174
+
Met
CAT
[ENA]
¡û
>W1810401293
PYGV01000160
Cyanobacteriota
filamentous cyanobacterium CCP3 [PYGV]
10519
10591
+
Met
CAT
[ENA]
¡û
>W1511324021
JQFA01000004
Cyanobacteriota
Leptolyngbya sp. KIOST-1 [JQFA]
679715
679787
+
Met
CAT
[ENA]
¡û
>C161002691
AP017308
Cyanobacteriota
Leptolyngbya sp. NIES-3755 [AP017308]
4242248
4242176
-
Met
CAT
[Ensembl]
¡û
>W1610057127
BBWW01000001
Cyanobacteriota
Leptolyngbya sp. NIES-2104 [BBWW]
2372081
2372009
-
Met
CAT
[ENA]
¡û
>C131004312
CP003558
Cyanobacteriota
Synechococcus sp. PCC 6312 [CP003558]
2615345
2615418
+
Met
CAT
[Ensembl]
¡û
>W1610668902
LJZR01000027
Cyanobacteriota
Phormidesmis priestleyi Ana [LJZR]
13234
13309
+
Pseudo
CAT
[ENA]
¡û
>W1610744366
LMTZ01000002
Cyanobacteriota
Mastigocoleus testarum BC008 [LMTZ]
159565
159637
+
Met
CAT
[ENA]
¡û
>W1610744420
LMTZ01000159
Cyanobacteriota
Mastigocoleus testarum BC008 [LMTZ]
39277
39205
-
Met
CAT
[ENA]
¡û
>W1710053826
BBWW01000001
Cyanobacteriota
Leptolyngbya sp. NIES-2104 [BBWW]
2372081
2372009
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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