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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.290507 (35 seq.)
>W1711302834
MAJI01000007
Gammaproteobacteria
Serratia marcescens [MAJI]
705
630
-
Ala
TGC
[ENA]
¡û
>W1711384507
MEDF01000004
Gammaproteobacteria
Pasteurella multocida [MEDF]
12042
11967
-
Ala
TGC
[ENA]
¡û
>WENV180176179
OAWC01045455
[OAWC] human gut metagenome; faeces
85
160
+
Ala
TGC
[ENA]
¢þ
>WENV180178316
OAWH01002405
[OAWH] human gut metagenome; faeces
216
291
+
Ala
TGC
[ENA]
¢þ
>WENV180551542
OCJG01000441
[OCJG] human oral metagenome; human oral
3077
3152
+
Ala
TGC
[ENA]
¢þ
>WENV180718906
ODGI01002888
[ODGI] human metagenome; G_DNA_Buccal mucosa
259
334
+
Ala
TGC
[ENA]
¢þ
>WENV180721924
ODGL01032379
[ODGL] human metagenome; G_DNA_Subgingival plaque
276
351
+
Ala
TGC
[ENA]
¢þ
>WENV180783260
ODIQ01003331
[ODIQ] human metagenome; G_DNA_Tongue dorsum
1918
1993
+
Ala
TGC
[ENA]
¢þ
>WENV180820763
ODJR01036456
[ODJR] human metagenome; G_DNA_Tongue dorsum
216
291
+
Ala
TGC
[ENA]
¢þ
>WENV180831359
ODKB01115146
[ODKB] human metagenome; G_DNA_Tongue dorsum
216
291
+
Ala
TGC
[ENA]
¢þ
>WENV182498658
OITP01005984
[OITP] human gut metagenome; human gut
704
779
+
Ala
TGC
[ENA]
¢þ
>WENV182807761
OJVY01003071
[OJVY] human gut metagenome; human gut
607
532
-
Ala
TGC
[ENA]
¢þ
>WENV182835738
OKFQ01000319
[OKFQ] human gut metagenome; human gut
1660
1585
-
Ala
TGC
[ENA]
¢þ
>C181084053
CP023536
Gammaproteobacteria
Providencia alcalifaciens FDAARGOS_408 [CP023536]
1889599
1889674
+
Ala
TGC
-
¡û
>C181182177
CP029621
Gammaproteobacteria
Haemophilus influenzae 84P36H1 [CP029621]
1841436
1841511
+
Ala
TGC
-
¡û
>C191078430
CP031690
Gammaproteobacteria
Haemophilus influenzae P617-9224 [CP031690]
1105990
1106065
+
Ala
TGC
-
¡û
>C191078466
CP031690
Gammaproteobacteria
Haemophilus influenzae P617-9224 [CP031690]
273279
273204
-
Ala
TGC
-
¡û
>C191206860
LR134327
Gammaproteobacteria
Aggregatibacter aphrophilus ATCC 33389 NCTC5906 [LR134327]
2233099
2233024
-
Ala
TGC
-
¡û
>C191206886
LR134327
Gammaproteobacteria
Aggregatibacter aphrophilus ATCC 33389 NCTC5906 [LR134327]
465684
465609
-
Ala
TGC
-
¡û
>C191206888
LR134327
Gammaproteobacteria
Aggregatibacter aphrophilus ATCC 33389 NCTC5906 [LR134327]
251845
251770
-
Ala
TGC
-
¡û
>C191212129
LR134486
Gammaproteobacteria
Actinobacillus equuli NCTC9435 [LR134486]
1850781
1850706
-
Ala
TGC
-
¡û
>W1910834072
MZII01000042
Gammaproteobacteria
Haemophilus influenzae 6P9H1 [MZII]
36
111
+
Ala
TGC
[ENA]
¡û
>W1910835572
MZJL01000049
Gammaproteobacteria
Haemophilus influenzae 49P5H1 [MZJL]
490
415
-
Ala
TGC
[ENA]
¡û
>W1910835636
MZJM01000049
Gammaproteobacteria
Haemophilus influenzae 49P21H1 [MZJM]
174
249
+
Ala
TGC
[ENA]
¡û
>W1910838794
MZLV01000041
Gammaproteobacteria
Haemophilus influenzae 116P14H1 [MZLV]
516
441
-
Ala
TGC
[ENA]
¡û
>W1911753378
QWMH01000004
Gammaproteobacteria
Haemophilus influenzae 60362_NP_Hi1 [QWMH]
28604
28679
+
Ala
TGC
[ENA]
¡û
>W1810578606
QEPU01000031
Gammaproteobacteria
Aggregatibacter aphrophilus C2008000870 [QEPU]
353
278
-
Ala
TGC
[ENA]
¡û
>W1810775312
QQKD01000040
Gammaproteobacteria
Haemophilus haemolyticus M26176 [QQKD]
274
349
+
Ala
TGC
[ENA]
¡û
>W1810910382
QVKD01000026
Gammaproteobacteria
Haemophilus influenzae P635-7537 [QVKD]
489
414
-
Ala
TGC
[ENA]
¡û
>W1810910433
QVKE01000023
Gammaproteobacteria
Haemophilus influenzae P634-7311 [QVKE]
489
414
-
Ala
TGC
[ENA]
¡û
>W1511204163
JMQP01000001
Gammaproteobacteria
Haemophilus influenzae 1209 [JMQP]
124850
124775
-
Ala
TGC
[ENA]
¡û
>W11150797
AEWB01000044
Gammaproteobacteria
Aggregatibacter aphrophilus ATCC 33389 [AEWB]
208
283
+
Ala
TGC
[ENA]
¡û
>C131015203
CP005384
Gammaproteobacteria
Glaesserella parasuis ZJ0906 [CP005384]
1953830
1953755
-
Ala
TGC
[Ensembl]
¡û
>W1610575282
JZXO01000002
Gammaproteobacteria
Pasteurella multocida [JZXO]
270
195
-
Ala
TGC
[ENA]
¡û
>W1710693350
JZXO01000002
Gammaproteobacteria
Pasteurella multocida [JZXO]
270
195
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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