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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.290580 (45 seq.)
>W1711409434
MGOR01000380
Gammaproteobacteria
Chromatiales bacterium RIFOXYA1_FULL_46_5 [MGOR]
1349
1274
-
Gly
GCC
[ENA]
¡û
>W1711409435
MGOR01000380
Gammaproteobacteria
Chromatiales bacterium RIFOXYA1_FULL_46_5 [MGOR]
1219
1144
-
Gly
GCC
[ENA]
¡û
>WENV170574225
FLYM01015467
[FLYM] hot springs metagenome; Sediment
190
115
-
Gly
GCC
[ENA]
¡û
>C191129063
CP034683
Gammaproteobacteria
Rheinheimera mangrovi LHK132 [CP034683]
725053
725128
+
Gly
GCC
-
¡û
>C191129064
CP034683
Gammaproteobacteria
Rheinheimera mangrovi LHK132 [CP034683]
725180
725255
+
Gly
GCC
-
¡û
>C191129072
CP034683
Gammaproteobacteria
Rheinheimera mangrovi LHK132 [CP034683]
2222416
2222491
+
Gly
GCC
-
¡û
>C191129075
CP034683
Gammaproteobacteria
Rheinheimera mangrovi LHK132 [CP034683]
2222800
2222875
+
Gly
GCC
-
¡û
>W2011484854
RRCF01000001
Gammaproteobacteria
Pararheinheimera mesophila IITR13 [RRCF]
1516522
1516447
-
Gly
GCC
[ENA]
¡û
>W2011484855
RRCF01000001
Gammaproteobacteria
Pararheinheimera mesophila IITR13 [RRCF]
1516397
1516322
-
Gly
GCC
[ENA]
¡û
>W2011484856
RRCF01000001
Gammaproteobacteria
Pararheinheimera mesophila IITR13 [RRCF]
1516272
1516197
-
Gly
GCC
[ENA]
¡û
>W2011484857
RRCF01000001
Gammaproteobacteria
Pararheinheimera mesophila IITR13 [RRCF]
1516147
1516072
-
Gly
GCC
[ENA]
¡û
>W2011484864
RRCF01000001
Gammaproteobacteria
Pararheinheimera mesophila IITR13 [RRCF]
318157
318082
-
Gly
GCC
[ENA]
¡û
>W2011484867
RRCF01000001
Gammaproteobacteria
Pararheinheimera mesophila IITR13 [RRCF]
317774
317699
-
Gly
GCC
[ENA]
¡û
>W2011520575
RZUF01000004
Gammaproteobacteria
Rheinheimera sp. YQF-1 [RZUF]
123178
123253
+
Gly
GCC
[ENA]
¡û
>W2011520579
RZUF01000007
Gammaproteobacteria
Rheinheimera sp. YQF-1 [RZUF]
129747
129822
+
Gly
GCC
[ENA]
¡û
>W2011520582
RZUF01000007
Gammaproteobacteria
Rheinheimera sp. YQF-1 [RZUF]
130131
130206
+
Gly
GCC
[ENA]
¡û
>W2012124434
VRLR01000001
Gammaproteobacteria
Pararheinheimera tangshanensis JA3-B52 [VRLR]
501858
501783
-
Gly
GCC
[ENA]
¡û
>W2012124435
VRLR01000001
Gammaproteobacteria
Pararheinheimera tangshanensis JA3-B52 [VRLR]
501726
501651
-
Gly
GCC
[ENA]
¡û
>W2012124437
VRLR01000001
Gammaproteobacteria
Pararheinheimera tangshanensis JA3-B52 [VRLR]
501216
501141
-
Gly
GCC
[ENA]
¡û
>W2012124491
VRLR01000008
Gammaproteobacteria
Pararheinheimera tangshanensis JA3-B52 [VRLR]
135940
136015
+
Gly
GCC
[ENA]
¡û
>W2012124494
VRLR01000008
Gammaproteobacteria
Pararheinheimera tangshanensis JA3-B52 [VRLR]
136323
136398
+
Gly
GCC
[ENA]
¡û
>W2110030085
BMLH01000001
Gammaproteobacteria
Rheinheimera tangshanensis CGMCC 1.6362 [BMLH]
350245
350320
+
Gly
GCC
[ENA]
¡û
>W2110030086
BMLH01000001
Gammaproteobacteria
Rheinheimera tangshanensis CGMCC 1.6362 [BMLH]
350377
350452
+
Gly
GCC
[ENA]
¡û
>W2110030087
BMLH01000001
Gammaproteobacteria
Rheinheimera tangshanensis CGMCC 1.6362 [BMLH]
350503
350578
+
Gly
GCC
[ENA]
¡û
>W2110030138
BMLH01000007
Gammaproteobacteria
Rheinheimera tangshanensis CGMCC 1.6362 [BMLH]
84969
84894
-
Gly
GCC
[ENA]
¡û
>W2110030141
BMLH01000007
Gammaproteobacteria
Rheinheimera tangshanensis CGMCC 1.6362 [BMLH]
84586
84511
-
Gly
GCC
[ENA]
¡û
>C231664765
OX352320
Gammaproteobacteria
Rheinheimera sp. MM224 [OX352320]
659537
659612
+
Gly
GCC
-
¡û
>C231664766
OX352320
Gammaproteobacteria
Rheinheimera sp. MM224 [OX352320]
659668
659743
+
Gly
GCC
-
¡û
>C231664773
OX352320
Gammaproteobacteria
Rheinheimera sp. MM224 [OX352320]
2307059
2307134
+
Gly
GCC
-
¡û
>C231664776
OX352320
Gammaproteobacteria
Rheinheimera sp. MM224 [OX352320]
2307445
2307520
+
Gly
GCC
-
¡û
>C231664777
OX352320
Gammaproteobacteria
Rheinheimera sp. MM224 [OX352320]
2307566
2307641
+
Gly
GCC
-
¡û
>W1511573476
LAMX01000013
Gammaproteobacteria
Rheinheimera sp. KL1 [LAMX]
114773
114848
+
Gly
GCC
[ENA]
¡û
>W1511573495
LAMX01000028
Gammaproteobacteria
Rheinheimera sp. KL1 [LAMX]
9709
9634
-
Gly
GCC
[ENA]
¡û
>W1511573498
LAMX01000028
Gammaproteobacteria
Rheinheimera sp. KL1 [LAMX]
9326
9251
-
Gly
GCC
[ENA]
¡û
>W1511584696
LAVS01000025
Gammaproteobacteria
Rheinheimera mesophila IITR-13 [LAVS]
25496
25421
-
Gly
GCC
[ENA]
¡û
>W1511584697
LAVS01000025
Gammaproteobacteria
Rheinheimera mesophila IITR-13 [LAVS]
25371
25296
-
Gly
GCC
[ENA]
¡û
>W1511584698
LAVS01000025
Gammaproteobacteria
Rheinheimera mesophila IITR-13 [LAVS]
25246
25171
-
Gly
GCC
[ENA]
¡û
>W1511584700
LAVS01000026
Gammaproteobacteria
Rheinheimera mesophila IITR-13 [LAVS]
20329
20254
-
Gly
GCC
[ENA]
¡û
>W1511584703
LAVS01000026
Gammaproteobacteria
Rheinheimera mesophila IITR-13 [LAVS]
19946
19871
-
Gly
GCC
[ENA]
¡û
>W11162863
AFHI01000013
Gammaproteobacteria
Rheinheimera sp. A13L [AFHI]
87764
87839
+
Gly
GCC
[ENA]
¡û
>W11162866
AFHI01000013
Gammaproteobacteria
Rheinheimera sp. A13L [AFHI]
88149
88224
+
Gly
GCC
[ENA]
¡û
>W11162867
AFHI01000013
Gammaproteobacteria
Rheinheimera sp. A13L [AFHI]
88270
88345
+
Gly
GCC
[ENA]
¡û
>W11162882
AFHI01000024
Gammaproteobacteria
Rheinheimera sp. A13L [AFHI]
30279
30204
-
Gly
GCC
[ENA]
¡û
>W11162883
AFHI01000024
Gammaproteobacteria
Rheinheimera sp. A13L [AFHI]
30148
30073
-
Gly
GCC
[ENA]
¡û
>W11162884
AFHI01000024
Gammaproteobacteria
Rheinheimera sp. A13L [AFHI]
30022
29947
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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