This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.290590 (57 seq.)
>W1711751196
MUNO01000005
Betaproteobacteria
Polaromonas sp. A23 [MUNO]
146534
146609
+
Val
TAC
[ENA]
¡û
>C171091650
CP019236
Betaproteobacteria
Rhodoferax koreense DCY-110 [CP019236]
4053580
4053505
-
Val
TAC
-
¡û
>C017295
CP000529
Betaproteobacteria
Polaromonas naphthalenivorans CJ2 [CP000529]
1721370
1721445
+
Val
TAC
[Ensembl]
¡û
>C017353
CP000316
Betaproteobacteria
Polaromonas sp. JS666 [CP000316]
3231281
3231206
-
Val
TAC
[Ensembl]
¡û
>WENV180016496
FSVG01000863
[FSVG] metagenome; soil
346
421
+
Val
TAC
[ENA]
¢þ
>WENV180016863
FSVX01001152
[FSVX] metagenome; soil
304
379
+
Val
TAC
[ENA]
¢þ
>WENV180017727
FSXQ01000272
[FSXQ] metagenome; soil
529
604
+
Val
TAC
[ENA]
¢þ
>WENV180017801
FSXQ01002854
[FSXQ] metagenome; soil
2829
2904
+
Val
TAC
[ENA]
¢þ
>WENV180018546
FSZR01001249
[FSZR] metagenome; soil
2224
2149
-
Val
TAC
[ENA]
¢þ
>WENV180023894
FTIF01003516
[FTIF] metagenome; soil
6022
5947
-
Val
TAC
[ENA]
¢þ
>WENV180023929
FTIF01004390
[FTIF] metagenome; soil
31847
31772
-
Val
TAC
[ENA]
¢þ
>WENV180023950
FTIF01004961
[FTIF] metagenome; soil
8007
7932
-
Val
TAC
[ENA]
¢þ
>WENV180024177
FTIF01140805
[FTIF] metagenome; soil
257
332
+
Val
TAC
[ENA]
¢þ
>WENV180024296
FTIG01040504
[FTIG] metagenome; soil
749
824
+
Val
TAC
[ENA]
¢þ
>WENV180025558
FTIP01061047
[FTIP] metagenome; soil
10
85
+
Val
TAC
[ENA]
¢þ
>WENV180025657
FTIP01263364
[FTIP] metagenome; soil
896
821
-
Val
TAC
[ENA]
¢þ
>WENV180025967
FTIR01001013
[FTIR] metagenome; soil
22877
22802
-
Val
TAC
[ENA]
¢þ
>WENV180026147
FTIR01168560
[FTIR] metagenome; soil
3
78
+
Val
TAC
[ENA]
¢þ
>WENV180026182
FTIR01257454
[FTIR] metagenome; soil
459
384
-
Val
TAC
[ENA]
¢þ
>WENV180030550
FTJN01000059
[FTJN] metagenome; soil
37811
37886
+
Val
TAC
[ENA]
¢þ
>WENV180032717
FTKD01000078
[FTKD] metagenome; soil
537876
537801
-
Val
TAC
[ENA]
¢þ
>WENV180032817
FTKD01001454
[FTKD] metagenome; soil
65840
65765
-
Val
TAC
[ENA]
¢þ
>WENV180033037
FTKD01096408
[FTKD] metagenome; soil
129
204
+
Val
TAC
[ENA]
¢þ
>WENV180034074
FTKM01539955
[FTKM] metagenome; soil
1065
990
-
Val
TAC
[ENA]
¢þ
>WENV180035029
FTKT01000274
[FTKT] metagenome; soil
17834
17759
-
Val
TAC
[ENA]
¢þ
>WENV180304276
OBJH01206039
[OBJH] soil metagenome; soil
13
88
+
Val
TAC
[ENA]
¢þ
>WENV180594110
OCOY01043416
[OCOY] marine metagenome; ENVO:00002010
237
312
+
Val
TAC
[ENA]
¢þ
>WENV181046956
ODXX01035573
[ODXX] human metagenome; G_DNA_Buccal mucosa
138
213
+
Val
TAC
[ENA]
¢þ
>WENV181163152
OEIO01114784
[OEIO] marine metagenome; sea ice
217
142
-
Val
TAC
[ENA]
¢þ
>WENV181369634
OFQP01014313
[OFQP] freshwater metagenome; Freshwater Lake
89
14
-
Val
TAC
[ENA]
¢þ
>WENV181370042
OFQR01008426
[OFQR] freshwater metagenome; Freshwater Lake
362
437
+
Val
TAC
[ENA]
¢þ
>WENV181379182
OFRC01047206
[OFRC] wastewater metagenome; Exp Tend CN 10WW
122
47
-
Val
TAC
[ENA]
¢þ
>WENV181395880
OFSB01014940
[OFSB] freshwater metagenome; Freshwater Lake
168
243
+
Val
TAC
[ENA]
¢þ
>C08007667
CP000316
Betaproteobacteria
Polaromonas sp. JS666 [CP000316]
3231281
3231209
-
Val
TAC
[Ensembl]
¡û
>W141265993
CCJP01000005
Betaproteobacteria
Polaromonas sp. CG9_12 CJ2 [CCJP]
4403930
4404005
+
Val
TAC
[ENA]
¡û
>WENV001930
AACY020054368
Marine microbial communities from Global Ocean Sampling (GOS)
1154
1079
-
Val
TAC
[ENA]
>WENV183697424
OUNJ010768636
[OUNJ] metagenome; soil
1
76
+
Val
TAC
[ENA]
¢þ
>WENV170711296
LNFM01004409
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
31923
31998
+
Val
TAC
[ENA]
¢þ
>W09101632
AAFQ02000010
Betaproteobacteria
Polaromonas sp. JS666 [AAFQ]
179338
179413
+
Val
TAC
[ENA]
¡û
>W09104891
AANM01000035
Betaproteobacteria
Polaromonas naphthalenivorans CJ2 [AANM]
20415
20490
+
Val
TAC
[ENA]
¡û
>C191073172
CP031013
Betaproteobacteria
Polaromonas sp. SP1 [CP031013]
3105563
3105638
+
Val
TAC
-
¡û
>W141565104
JIBH01000001
Betaproteobacteria
Polaromonas sp. EUR3 1.2.1 [JIBH]
1523904
1523979
+
Val
TAC
[ENA]
¡û
>W141695470
JMDZ01000005
Betaproteobacteria
Polaromonas glacialis [JMDZ]
66378
66303
-
Val
TAC
[ENA]
¡û
>W1910699878
MERZ01000128
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_12_FULL_61_11 [MERZ]
4553
4478
-
Val
TAC
[ENA]
¡û
>W1910859494
NBZV01000003
Betaproteobacteria
Polaromonas sp. AER18D-145 [NBZV]
146699
146774
+
Val
TAC
[ENA]
¡û
>W1910859544
NBZW01000013
Betaproteobacteria
Polaromonas sp. AET17H-212 [NBZW]
91666
91741
+
Val
TAC
[ENA]
¡û
>SRA1003100
SRR002326.199565
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
154
229
+
Val
TAC
[SRA]
>SRA1003125
SRR002326.223351
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
177
102
-
Val
TAC
[SRA]
>SRA1003968
SRR002328.63250
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
186
111
-
Val
TAC
[SRA]
>W1810577599
QEOJ01000002
Betaproteobacteria
Rhodoferax sp. YR267 [QEOJ]
587145
587070
-
Val
TAC
[ENA]
¡û
>W121084935
AKIV01000141
Betaproteobacteria
Polaromonas sp. CF318 [AKIV]
1902
1977
+
Val
TAC
[ENA]
¡û
>W1610076197
BCYO01000004
Betaproteobacteria
Polaromonas jejuensis NBRC 106434 [BCYO]
83010
83085
+
Val
TAC
[ENA]
¡û
>W1710074012
BCYO01000004
Betaproteobacteria
Polaromonas jejuensis NBRC 106434 [BCYO]
83010
83085
+
Val
TAC
[ENA]
¡û
>W1710523384
FNHX01000001
Betaproteobacteria
Polaromonas sp. JS666 [FNHX]
826062
825987
-
Val
TAC
[ENA]
¡û
>W1710524829
FNJA01000008
Betaproteobacteria
Rhodoferax sp. OV413 OV413 [FNJA]
169466
169391
-
Val
TAC
[ENA]
¡û
>W1710557416
FOKZ01000021
Betaproteobacteria
Polaromonas sp. OV174 [FOKZ]
69106
69181
+
Val
TAC
[ENA]
¡û
>W1710578292
FPBM01000001
Betaproteobacteria
Polaromonas sp. YR568 [FPBM]
475983
475908
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK