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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.290785 (120 seq.)
>W1710874372
LMNO01000001
Actinomycetota
Rathayibacter sp. Leaf294 [LMNO]
90489
90564
+
Lys
TTT
[ENA]
¡û
>W1710874524
LMNR01000001
Actinomycetota
Rathayibacter sp. Leaf296 [LMNR]
1001378
1001305
-
Lys
TTT
[ENA]
¡û
>W1710874598
LMNT01000001
Actinomycetota
Rathayibacter sp. Leaf299 [LMNT]
1158582
1158509
-
Lys
TTT
[ENA]
¡û
>W131224977
AUDF01000002
Actinomycetota
Rathayibacter toxicus DSM 7488 [AUDF]
139915
139990
+
Lys
TTT
[ENA]
¡û
>W1711747194
MUKN01000004
Actinomycetota
Rathayibacter sp. VKM Ac-2630 [MUKN]
95057
95132
+
Lys
TTT
[ENA]
¡û
>W131224365
AUCS01000010
Actinomycetota
Dermatophilus congolensis DSM 44180 = NBRC 105199 [AUCS]
8117
8042
-
Lys
TTT
[ENA]
¡û
>WENV180033999
FTKM01046334
[FTKM] metagenome; soil
271
345
+
Lys
TTT
[ENA]
¢þ
>WENV180103464
OAPA01043361
[OAPA] marine metagenome; ENVO:00002010
90
17
-
Lys
TTT
[ENA]
¢þ
>WENV180114791
OAPS01047671
[OAPS] marine metagenome; sea water
235
160
-
Lys
TTT
[ENA]
¢þ
>WENV180360723
OBNU01015760
[OBNU] marine metagenome; ENVO:00000021 'freshwater lake
167
94
-
Lys
TTT
[ENA]
¢þ
>WENV180394503
OBPS01011259
[OBPS] marine metagenome; ENVO:00002010 seawater
760
687
-
Lys
TTT
[ENA]
¢þ
>WENV180395597
OBPT01051732
[OBPT] marine metagenome; ENVO:00002010 seawater
168
241
+
Lys
TTT
[ENA]
¢þ
>WENV180590928
OCOU01038368
[OCOU] marine metagenome; Water
58
131
+
Lys
TTT
[ENA]
¢þ
>WENV170727185
LSQX01407680
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
242
167
-
Lys
TTT
[ENA]
¢þ
>C181001447
AP017315
Actinomycetota
Microcella alkaliphila JAM AC0309 [AP017315]
2430346
2430421
+
Lys
TTT
-
¡û
>C181225167
LT906453
Actinomycetota
Dermatophilus congolensis NCTC13039 [LT906453]
918791
918718
-
Lys
TTT
-
¡û
>C191056240
CP028129
Actinomycetota
Rathayibacter rathayi DSM 7485 [CP028129]
487266
487193
-
Lys
TTT
-
¡û
>C191056257
CP028130
Actinomycetota
Rathayibacter iranicus NCCPB 2253 [CP028130]
1883313
1883386
+
Lys
TTT
-
¡û
>C191056542
CP028137
Actinomycetota
Rathayibacter festucae DSM 15932 [CP028137]
277189
277114
-
Lys
TTT
-
¡û
>C191183352
CP040872
Actinomycetota
Agromyces laixinhei HY052 [CP040872]
1327618
1327545
-
Lys
TTT
-
¡û
>WENV002340
AACY020065464
Marine microbial communities from Global Ocean Sampling (GOS)
19
96
+
Lys
TTT
[ENA]
>W1910857507
NBWZ01000001
Actinomycetota
Subtercola boreus K300 [NBWZ]
2804108
2804182
+
Lys
TTT
[ENA]
¡û
>W1910857564
NBXA01000026
Actinomycetota
Subtercola boreus P27444 [NBXA]
56024
56098
+
Lys
TTT
[ENA]
¡û
>W1910857608
NBXB01000033
Actinomycetota
Subtercola boreus P27479 [NBXB]
64308
64382
+
Lys
TTT
[ENA]
¡û
>W1910857649
NBXC01000024
Actinomycetota
Subtercola boreus P27924 [NBXC]
113995
114069
+
Lys
TTT
[ENA]
¡û
>W1910857692
NBXD01000024
Actinomycetota
Subtercola boreus P27979 [NBXD]
113995
114069
+
Lys
TTT
[ENA]
¡û
>W1910857735
NBXE01000029
Actinomycetota
Subtercola boreus P28004 [NBXE]
113995
114069
+
Lys
TTT
[ENA]
¡û
>W1911497509
OCNL01000010
Actinomycetota
Rathayibacter rathayi VKM Ac-1601 [OCNL]
38576
38503
-
Lys
TTT
[ENA]
¡û
>W1810276982
PSTL01000006
Actinomycetota
Rathayibacter sp. AY1A7 [PSTL]
4008
3935
-
Lys
TTT
[ENA]
¡û
>W1810277039
PSTM01000024
Actinomycetota
Rathayibacter sp. AY1A5 [PSTM]
20115
20190
+
Lys
TTT
[ENA]
¡û
>W1810277133
PSTP01000001
Actinomycetota
Rathayibacter sp. AY1A2 [PSTP]
514213
514288
+
Lys
TTT
[ENA]
¡û
>W1810277744
PSUC01000044
Actinomycetota
Rathayibacter sp. AY2B7 [PSUC]
20178
20253
+
Lys
TTT
[ENA]
¡û
>W1810277791
PSUD01000022
Actinomycetota
Rathayibacter rathayi AY2B6 [PSUD]
38634
38561
-
Lys
TTT
[ENA]
¡û
>W1810277810
PSUE01000002
Actinomycetota
Rathayibacter sp. AY2B5 [PSUE]
67421
67346
-
Lys
TTT
[ENA]
¡û
>W1810277918
PSUG01000028
Actinomycetota
Rathayibacter sp. AY2B3 [PSUG]
20106
20181
+
Lys
TTT
[ENA]
¡û
>W1810277988
PSUI01000006
Actinomycetota
Rathayibacter rathayi AY2A9 [PSUI]
38589
38516
-
Lys
TTT
[ENA]
¡û
>W1810278068
PSUK01000005
Actinomycetota
Rathayibacter rathayi AY2A3 [PSUK]
68611
68684
+
Lys
TTT
[ENA]
¡û
>W1810278136
PSUL01000019
Actinomycetota
Rathayibacter rathayi AY1I9 [PSUL]
38513
38438
-
Lys
TTT
[ENA]
¡û
>W1810278175
PSUM01000031
Actinomycetota
Rathayibacter tritici ATCC 11402 [PSUM]
14950
14875
-
Lys
TTT
[ENA]
¡û
>W1810278273
PSUO01000019
Actinomycetota
Rathayibacter tritici GSPB 2748 [PSUO]
34564
34489
-
Lys
TTT
[ENA]
¡û
>W1810278289
PSUP01000006
Actinomycetota
Rathayibacter rathayi ICMP 2576 [PSUP]
38580
38507
-
Lys
TTT
[ENA]
¡û
>W1810278347
PSUQ01000019
Actinomycetota
Rathayibacter rathayi ICMP 2572 [PSUQ]
38580
38507
-
Lys
TTT
[ENA]
¡û
>W1810278384
PSUR01000016
Actinomycetota
Rathayibacter rathayi AY1H7 [PSUR]
17113
17186
+
Lys
TTT
[ENA]
¡û
>W1810278467
PSUT01000008
Actinomycetota
Rathayibacter rathayi AY1H5 [PSUT]
78344
78271
-
Lys
TTT
[ENA]
¡û
>W1810278513
PSUU01000021
Actinomycetota
Rathayibacter sp. AY1H3 [PSUU]
26520
26445
-
Lys
TTT
[ENA]
¡û
>W1810278577
PSUV01000029
Actinomycetota
Rathayibacter sp. AY1H2 [PSUV]
20320
20395
+
Lys
TTT
[ENA]
¡û
>W1810278619
PSUW01000031
Actinomycetota
Rathayibacter sp. AY1G9 [PSUW]
12684
12609
-
Lys
TTT
[ENA]
¡û
>W1810278690
PSUY01000009
Actinomycetota
Rathayibacter rathayi AY1G4 [PSUY]
17098
17171
+
Lys
TTT
[ENA]
¡û
>W1810278724
PSUZ01000008
Actinomycetota
Rathayibacter sp. AY1G1 [PSUZ]
67179
67104
-
Lys
TTT
[ENA]
¡û
>W1810278789
PSVA01000019
Actinomycetota
Rathayibacter sp. AY1F9 [PSVA]
20137
20212
+
Lys
TTT
[ENA]
¡û
>W1810278827
PSVB01000012
Actinomycetota
Rathayibacter sp. AY1F8 [PSVB]
66008
66083
+
Lys
TTT
[ENA]
¡û
>W1810278854
PSVC01000006
Actinomycetota
Rathayibacter sp. AY1F7 [PSVC]
150133
150208
+
Lys
TTT
[ENA]
¡û
>W1810278922
PSVD01000027
Actinomycetota
Rathayibacter sp. AY1F6 [PSVD]
20309
20384
+
Lys
TTT
[ENA]
¡û
>W1810278937
PSVE01000005
Actinomycetota
Rathayibacter sp. AY1F4 [PSVE]
72960
72885
-
Lys
TTT
[ENA]
¡û
>W1810278968
PSVF01000001
Actinomycetota
Rathayibacter sp. AY1F3 [PSVF]
205262
205337
+
Lys
TTT
[ENA]
¡û
>W1810279033
PSVG01000007
Actinomycetota
Rathayibacter sp. AY1F2 [PSVG]
26515
26440
-
Lys
TTT
[ENA]
¡û
>W1810279083
PSVH01000018
Actinomycetota
Rathayibacter sp. AY1E9 [PSVH]
47593
47668
+
Lys
TTT
[ENA]
¡û
>W1810279123
PSVI01000021
Actinomycetota
Rathayibacter sp. AY1E8 [PSVI]
3717
3642
-
Lys
TTT
[ENA]
¡û
>W1810279222
PSVK01000025
Actinomycetota
Rathayibacter sp. AY1E6 [PSVK]
20140
20215
+
Lys
TTT
[ENA]
¡û
>W1810279263
PSVL01000038
Actinomycetota
Rathayibacter sp. AY1E5 [PSVL]
12733
12658
-
Lys
TTT
[ENA]
¡û
>W1810279273
PSVM01000004
Actinomycetota
Rathayibacter sp. AY1E4 [PSVM]
159151
159226
+
Lys
TTT
[ENA]
¡û
>W1810279320
PSVN01000003
Actinomycetota
Rathayibacter sp. AY1E3 [PSVN]
264258
264333
+
Lys
TTT
[ENA]
¡û
>W1810279475
PSVQ01000021
Actinomycetota
Rathayibacter sp. AY1D9 [PSVQ]
42249
42324
+
Lys
TTT
[ENA]
¡û
>W1810279585
PSVT01000013
Actinomycetota
Rathayibacter rathayi AY1D6 [PSVT]
4075
4002
-
Lys
TTT
[ENA]
¡û
>W1810279614
PSVU01000002
Actinomycetota
Rathayibacter sp. AY1D5 [PSVU]
87999
87924
-
Lys
TTT
[ENA]
¡û
>W1810279660
PSVV01000002
Actinomycetota
Rathayibacter sp. AY1D4 [PSVV]
55226
55151
-
Lys
TTT
[ENA]
¡û
>W1810279736
PSVW01000020
Actinomycetota
Rathayibacter sp. AY1D3 [PSVW]
12695
12620
-
Lys
TTT
[ENA]
¡û
>W1810279752
PSVX01000019
Actinomycetota
Rathayibacter sp. AY1D2 [PSVX]
42206
42281
+
Lys
TTT
[ENA]
¡û
>W1810279795
PSVY01000002
Actinomycetota
Rathayibacter sp. AY1D1 [PSVY]
12689
12614
-
Lys
TTT
[ENA]
¡û
>W1810279895
PSWA01000011
Actinomycetota
Rathayibacter rathayi AY1C8 [PSWA]
17156
17231
+
Lys
TTT
[ENA]
¡û
>W1810279953
PSWB01000035
Actinomycetota
Rathayibacter sp. AY1C7 [PSWB]
15248
15173
-
Lys
TTT
[ENA]
¡û
>W1810279982
PSWC01000014
Actinomycetota
Rathayibacter sp. AY1C6 [PSWC]
16425
16350
-
Lys
TTT
[ENA]
¡û
>W1810280082
PSWE01000036
Actinomycetota
Rathayibacter sp. AY1C4 [PSWE]
12466
12391
-
Lys
TTT
[ENA]
¡û
>W1810280105
PSWF01000009
Actinomycetota
Rathayibacter sp. AY1C3 [PSWF]
111426
111501
+
Lys
TTT
[ENA]
¡û
>W1810280158
PSWG01000013
Actinomycetota
Rathayibacter sp. AY1C2 [PSWG]
59205
59280
+
Lys
TTT
[ENA]
¡û
>W1810280297
PSWJ01000032
Actinomycetota
Rathayibacter sp. AY1B8 [PSWJ]
20308
20383
+
Lys
TTT
[ENA]
¡û
>W1810280452
PSWN01000006
Actinomycetota
Rathayibacter sp. AY1B4 [PSWN]
12680
12605
-
Lys
TTT
[ENA]
¡û
>W1810280623
PSWR01000081
Actinomycetota
Rathayibacter sp. TRS19 [PSWR]
11288
11213
-
Lys
TTT
[ENA]
¡û
>W1810280666
PSWS01000046
Actinomycetota
Rathayibacter tritici DSM 7486 [PSWS]
33233
33158
-
Lys
TTT
[ENA]
¡û
>W1810280710
PSWT01000039
Actinomycetota
Rathayibacter tritici ICMP 2628 [PSWT]
32945
32870
-
Lys
TTT
[ENA]
¡û
>W1810280764
PSWU01000004
Actinomycetota
Rathayibacter toxicus FH99 [PSWU]
356776
356702
-
Lys
TTT
[ENA]
¡û
>W1810280850
PSWW01000005
Actinomycetota
Rathayibacter toxicus FH86 [PSWW]
355929
355855
-
Lys
TTT
[ENA]
¡û
>W1810280893
PSWX01000004
Actinomycetota
Rathayibacter toxicus FH85 [PSWX]
356775
356701
-
Lys
TTT
[ENA]
¡û
>W1810280979
PSWZ01000004
Actinomycetota
Rathayibacter toxicus FH81 [PSWZ]
356298
356224
-
Lys
TTT
[ENA]
¡û
>W1810281022
PSXA01000003
Actinomycetota
Rathayibacter toxicus FH78 [PSXA]
350863
350789
-
Lys
TTT
[ENA]
¡û
>W1810281065
PSXB01000002
Actinomycetota
Rathayibacter toxicus FH183 [PSXB]
417497
417423
-
Lys
TTT
[ENA]
¡û
>W1810281120
PSXC01000005
Actinomycetota
Rathayibacter toxicus FH149 [PSXC]
355651
355577
-
Lys
TTT
[ENA]
¡û
>W1810281163
PSXD01000003
Actinomycetota
Rathayibacter toxicus FH147 [PSXD]
356775
356701
-
Lys
TTT
[ENA]
¡û
>W1810281249
PSXF01000004
Actinomycetota
Rathayibacter toxicus FH145 [PSXF]
353255
353181
-
Lys
TTT
[ENA]
¡û
>W1810281292
PSXG01000004
Actinomycetota
Rathayibacter toxicus FH142 [PSXG]
355925
355851
-
Lys
TTT
[ENA]
¡û
>W1810281335
PSXH01000003
Actinomycetota
Rathayibacter toxicus FH141 [PSXH]
356939
356865
-
Lys
TTT
[ENA]
¡û
>W1810281422
PSXJ01000005
Actinomycetota
Rathayibacter toxicus FH139 [PSXJ]
355926
355852
-
Lys
TTT
[ENA]
¡û
>W1810281465
PSXK01000005
Actinomycetota
Rathayibacter toxicus FH138 [PSXK]
355661
355587
-
Lys
TTT
[ENA]
¡û
>W1810281508
PSXL01000004
Actinomycetota
Rathayibacter toxicus FH137 [PSXL]
356776
356702
-
Lys
TTT
[ENA]
¡û
>W1810281548
PSXM01000004
Actinomycetota
Rathayibacter toxicus FH128 [PSXM]
355073
354999
-
Lys
TTT
[ENA]
¡û
>W1810281595
PSXN01000006
Actinomycetota
Rathayibacter toxicus FH100 [PSXN]
262062
261988
-
Lys
TTT
[ENA]
¡û
>W1810281757
PSXR01000025
Actinomycetota
Rathayibacter rathayi CS6 [PSXR]
38580
38507
-
Lys
TTT
[ENA]
¡û
>W1810281868
PSXT01000031
Actinomycetota
Rathayibacter iranicus TRS5 [PSXT]
22231
22304
+
Lys
TTT
[ENA]
¡û
>W1810281963
PSXV01000036
Actinomycetota
Rathayibacter sp. AY1A1 [PSXV]
20313
20388
+
Lys
TTT
[ENA]
¡û
>W1810568976
QEFA01000001
Actinomycetota
Agromyces badenianii 845 [QEFA]
232884
232958
+
Lys
TTT
[ENA]
¡û
>W1810577923
QEOP01000001
Actinomycetota
Amnibacterium flavum M8JJ-5 [QEOP]
30757
30683
-
Lys
TTT
[ENA]
¡û
>W1810595374
QGDV01000004
Actinomycetota
Rathayibacter iranicus VKM Ac-1602 [QGDV]
234332
234405
+
Lys
TTT
[ENA]
¡û
>C151073265
CP010848
Actinomycetota
Rathayibacter toxicus 70137 [CP010848]
709499
709424
-
Lys
TTT
[Ensembl]
¡û
>SRA1025318
SRR035084.550324
454 Sequencing (SRP001805)
215
140
-
Lys
TTT
[SRA]
>SRA1025363
SRR035084.564851
454 Sequencing (SRP001805)
215
140
-
Lys
TTT
[SRA]
>SRA1051486
SRR035098.13517
454 Sequencing (SRP001819)
121
46
-
Lys
TTT
[SRA]
>SRA1053061
SRR035098.327763
454 Sequencing (SRP001819)
133
60
-
Lys
TTT
[SRA]
>SRA1053300
SRR035098.377604
454 Sequencing (SRP001819)
83
158
+
Lys
TTT
[SRA]
>W1510015444
BBQZ01000008
Actinomycetota
Demequina salsinemoris NBRC 105323 [BBQZ]
35860
35787
-
Lys
TTT
[ENA]
¡û
>C161054994
CP013292
Actinomycetota
Rathayibacter toxicus WAC3373 [CP013292]
718746
718821
+
Lys
TTT
-
¡û
>C161089176
CP015515
Actinomycetota
Rathayibacter tritici NCPPB 1953 [CP015515]
774734
774659
-
Lys
TTT
[Ensembl]
¡û
>W121124403
BAFE01000002
Actinomycetota
Mobilicoccus pelagius NBRC 104925 [BAFE]
273
198
-
Lys
TTT
[ENA]
¡û
>W121126446
BAGZ01000008
Actinomycetota
Austwickia chelonae NBRC 105200 [BAGZ]
34005
33930
-
Lys
TTT
[ENA]
¡û
>W1610630615
LIIN01000052
Actinomycetota
Rathayibacter tanaceti [LIIN]
3761
3836
+
Lys
TTT
[ENA]
¡û
>W1610736718
LMNO01000001
Actinomycetota
Rathayibacter sp. Leaf294 [LMNO]
90489
90564
+
Lys
TTT
[ENA]
¡û
>W1610736944
LMNT01000001
Actinomycetota
Rathayibacter sp. Leaf299 [LMNT]
1158582
1158509
-
Lys
TTT
[ENA]
¡û
>W1710555162
FOJD01000001
Actinomycetota
Austwickia chelonae [FOJD]
320742
320667
-
Lys
TTT
[ENA]
¡û
>W1710584750
FQVU01000005
Actinomycetota
Jatrophihabitans endophyticus [FQVU]
7228
7153
-
Lys
TTT
[ENA]
¡û
>W1710608948
FXBM01000001
Actinomycetota
Rathayibacter oskolensis VKM Ac-2121 [FXBM]
629344
629269
-
Lys
TTT
[ENA]
¡û
>W1710761754
LIIN01000052
Actinomycetota
Rathayibacter tanaceti [LIIN]
3761
3836
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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