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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.29079 (36 seq.)
>C025533
BA000039
Cyanobacteriota
Thermosynechococcus vestitus BP-1 [BA000039]
1240471
1240385
-
Ser
TGA
[Ensembl]
¡û
>WENV180013445
FMSI01084587
[FMSI] soil metagenome; Soil
3
89
+
Ser
TGA
[ENA]
¡û
>WENV181414372
OGCL01000284
[OGCL] hot springs metagenome; Hot spring water
41968
41882
-
Ser
TGA
[ENA]
¡û
>C181030492
CP018092
Cyanobacteriota
Thermostichus lividus PCC 6715 [CP018092]
728782
728694
-
Ser
TGA
-
¡û
>C191001222
AP018202
Cyanobacteriota
Thermostichus vulcanus NIES-2134 [AP018202]
1353496
1353408
-
Ser
TGA
-
¡û
>C191085223
CP032152
Cyanobacteriota
Thermosynechococcus vestitus E542 [CP032152]
2386852
2386938
+
Ser
TGA
-
¡û
>C141007950
CP006735
Cyanobacteriota
Thermosynechococcus sp. NK55a [CP006735]
805720
805634
-
Ser
TGA
-
¡û
>C201088935
CP040671
Cyanobacteriota
Thermosynechococcus sp. CL-1 [CP040671]
1657640
1657726
+
Ser
TGA
-
¡û
>C211280925
CP070960
Cyanobacteriota
Thermosynechococcus sp. TA-1 [CP070960]
237583
237497
-
Ser
TGA
-
¡û
>C231396152
CP098039
Cyanobacteriota
Thermosynechococcus sp. HN-54 [CP098039]
68345
68431
+
Ser
TGA
-
¡û
>C231396173
CP098039
Cyanobacteriota
Thermosynechococcus sp. HN-54 [CP098039]
2600736
2600822
+
Ser
TGA
-
¡û
>C241188875
CP096204
Cyanobacteriota
Thermosynechococcus sp. B0 [CP096204]
1681326
1681412
+
Ser
TGA
-
¡û
>C241190853
CP096573
Cyanobacteriota
Thermosynechococcus sp. B1 [CP096573]
1670124
1670210
+
Ser
TGA
-
¡û
>C241192269
CP097584
Cyanobacteriota
Thermosynechococcus sp. B3 [CP097584]
1675187
1675273
+
Ser
TGA
-
¡û
>C241293674
CP130344
Cyanobacteriota
Thermosynechococcus sp. PP45 [CP130344]
241401
241315
-
Ser
TGA
-
¡û
>C241293690
CP130346
Cyanobacteriota
Thermosynechococcus sp. HY596 [CP130346]
1668237
1668323
+
Ser
TGA
-
¡û
>C241293750
CP130347
Cyanobacteriota
Thermosynechococcus sp. JY1339 [CP130347]
231441
231355
-
Ser
TGA
-
¡û
>C241316062
CP134166
Cyanobacteriota
Thermosynechococcus sp. PP22 [CP134166]
231938
231852
-
Ser
TGA
-
¡û
>C241316100
CP134167
Cyanobacteriota
Thermosynechococcus sp. PP551 [CP134167]
242427
242341
-
Ser
TGA
-
¡û
>C241316138
CP134168
Cyanobacteriota
Thermosynechococcus sp. PP555 [CP134168]
242427
242341
-
Ser
TGA
-
¡û
>C241316176
CP134169
Cyanobacteriota
Thermosynechococcus sp. PKX82 [CP134169]
243047
242961
-
Ser
TGA
-
¡û
>C241316214
CP134170
Cyanobacteriota
Thermosynechococcus sp. PKX91 [CP134170]
241025
240939
-
Ser
TGA
-
¡û
>C241316252
CP134171
Cyanobacteriota
Thermosynechococcus sp. PKX95 [CP134171]
241025
240939
-
Ser
TGA
-
¡û
>C241316290
CP134172
Cyanobacteriota
Thermosynechococcus sp. WL11 [CP134172]
241024
240938
-
Ser
TGA
-
¡û
>C241316328
CP134173
Cyanobacteriota
Thermosynechococcus sp. WL15 [CP134173]
241024
240938
-
Ser
TGA
-
¡û
>C241316366
CP134174
Cyanobacteriota
Thermosynechococcus sp. WL17 [CP134174]
241024
240938
-
Ser
TGA
-
¡û
>C241316404
CP134175
Cyanobacteriota
Thermosynechococcus sp. GLH187 [CP134175]
236187
236101
-
Ser
TGA
-
¡û
>C241316442
CP134176
Cyanobacteriota
Thermosynechococcus sp. GLH333 [CP134176]
236186
236100
-
Ser
TGA
-
¡û
>C241316480
CP134177
Cyanobacteriota
Thermosynechococcus sp. GLH87 [CP134177]
236188
236102
-
Ser
TGA
-
¡û
>C241316518
CP134178
Cyanobacteriota
Thermosynechococcus sp. TG215 [CP134178]
239372
239286
-
Ser
TGA
-
¡û
>C241316556
CP134179
Cyanobacteriota
Thermosynechococcus sp. TG218 [CP134179]
239372
239286
-
Ser
TGA
-
¡û
>C241316594
CP134180
Cyanobacteriota
Thermosynechococcus sp. JY1331 [CP134180]
231441
231355
-
Ser
TGA
-
¡û
>C241316632
CP134181
Cyanobacteriota
Thermosynechococcus sp. QS41 [CP134181]
242307
242221
-
Ser
TGA
-
¡û
>C241316648
CP134182
Cyanobacteriota
Thermosynechococcus sp. HY591 [CP134182]
1668237
1668323
+
Ser
TGA
-
¡û
>C241316686
CP134183
Cyanobacteriota
Thermosynechococcus sp. HY593 [CP134183]
1668237
1668323
+
Ser
TGA
-
¡û
>C241316788
CP134200
Cyanobacteriota
Thermosynechococcus sp. QKsg1 [CP134200]
1670479
1670565
+
Ser
TGA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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