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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.290948 (31 seq.)
>W131227360
AUFC01000001
Bacillota
Anaerovorax odorimutans DSM 5092 [AUFC]
175672
175747
+
Lys
TTT
[ENA]
¡û
>WENV180298725
OBJA01563635
[OBJA] soil metagenome; sediment, water from around vicinity
198
123
-
Lys
TTT
[ENA]
¡û
>WENV170003412
AGTN01326896
[AGTN] bioreactor metagenome; poplar biomass
132
57
-
Lys
TTT
[ENA]
¡û
>WENV170561578
CZCA01014260
[CZCA] anaerobic digester metagenome; anaerobic digester
1358
1433
+
Lys
TTT
[ENA]
¡û
>WENV170562709
CZCB01004783
[CZCB] anaerobic digester metagenome; anaerobic digester
7194
7269
+
Lys
TTT
[ENA]
¡û
>WENV170606384
FUWD010658960
[FUWD] metagenome; unknown
34
109
+
Lys
TTT
[ENA]
¡û
>WENV170687550
LFRM01198556
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1349
1424
+
Lys
TTT
[ENA]
¡û
>WENV170690573
LFRM01348964
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
6079
6004
-
Lys
TTT
[ENA]
¡û
>WENV170968912
MTKW01016677
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
419
344
-
Lys
TTT
[ENA]
¡û
>W1910918585
NIBG01000014
Bacillota
Anaeromicrobium sediminis DY2726D [NIBG]
38825
38750
-
Lys
TTT
[ENA]
¡û
>W1910918588
NIBG01000015
Bacillota
Anaeromicrobium sediminis DY2726D [NIBG]
98062
97987
-
Lys
TTT
[ENA]
¡û
>W1910918590
NIBG01000019
Bacillota
Anaeromicrobium sediminis DY2726D [NIBG]
58
133
+
Lys
TTT
[ENA]
¡û
>W1910918599
NIBG01000019
Bacillota
Anaeromicrobium sediminis DY2726D [NIBG]
1478
1553
+
Lys
TTT
[ENA]
¡û
>W1911497711
OCSL01000001
Bacillota
Ezakiella peruensis M6.X2 [OCSL]
251859
251934
+
Lys
TTT
[ENA]
¡û
>W2010252486
CABIZN020000001
Bacillota
Firmicutes bacterium [CABIZN]
182917
182992
+
Lys
TTT
[ENA]
¡û
>W2010968437
NIBG01000014
Bacillota
Anaeromicrobium sediminis DY2726D [NIBG]
38825
38750
-
Lys
TTT
[ENA]
¡û
>W2010968440
NIBG01000015
Bacillota
Anaeromicrobium sediminis DY2726D [NIBG]
98062
97987
-
Lys
TTT
[ENA]
¡û
>W2010968442
NIBG01000019
Bacillota
Anaeromicrobium sediminis DY2726D [NIBG]
58
133
+
Lys
TTT
[ENA]
¡û
>W2010968451
NIBG01000019
Bacillota
Anaeromicrobium sediminis DY2726D [NIBG]
1478
1553
+
Lys
TTT
[ENA]
¡û
>W2011951596
UWPH01000025
Bacillota
Bacilliculturomica massiliensis Marseille-P3303 [UWPH]
374551
374626
+
Lys
TTT
[ENA]
¡û
>W2110372770
JADQTL010000009
Bacillota
Anaerovorax sp. IOR16 [JADQTL]
595659
595734
+
Lys
TTT
[ENA]
¡û
>C211363110
CP078093
Bacillota
Crassaminicella sp. 143-21 [CP078093]
336663
336588
-
Lys
TTT
-
¡û
>C211363145
CP078093
Bacillota
Crassaminicella sp. 143-21 [CP078093]
78598
78523
-
Lys
TTT
-
¡û
>C211363161
CP078093
Bacillota
Crassaminicella sp. 143-21 [CP078093]
77169
77094
-
Lys
TTT
-
¡û
>C211395056
CP082326
Bacillota
Crassaminicella profunda Ra1766H [CP082326]
148935
149010
+
Lys
TTT
-
¡û
>C211395075
CP082326
Bacillota
Crassaminicella profunda Ra1766H [CP082326]
729167
729242
+
Lys
TTT
-
¡û
>C211395101
CP082326
Bacillota
Crassaminicella profunda Ra1766H [CP082326]
1194110
1194185
+
Lys
TTT
-
¡û
>C211395117
CP082326
Bacillota
Crassaminicella profunda Ra1766H [CP082326]
1196034
1196109
+
Lys
TTT
-
¡û
>C211395132
CP082326
Bacillota
Crassaminicella profunda Ra1766H [CP082326]
1205233
1205308
+
Lys
TTT
-
¡û
>C211395145
CP082326
Bacillota
Crassaminicella profunda Ra1766H [CP082326]
4210145
4210070
-
Lys
TTT
-
¡û
>C211395161
CP082326
Bacillota
Crassaminicella profunda Ra1766H [CP082326]
2846994
2846919
-
Lys
TTT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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