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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.291145 (74 seq.)
>W1711174416
LWEE01000322
Gammaproteobacteria
Halioglobus sp. HI00S01 [LWEE]
24266
24341
+
Glu
TTC
[ENA]
¡û
>C171088766
CP019046
Gammaproteobacteria
Halioglobus pacificus RR3-57 [CP019046]
3670058
3670133
+
Glu
TTC
-
¡û
>C171094600
CP019450
Gammaproteobacteria
Halioglobus japonicus NBRC 107739 [CP019450]
2497874
2497949
+
Glu
TTC
-
¡û
>WENV180346660
OBLN01203467
[OBLN] sediment metagenome; sediment
174
249
+
Glu
TTC
[ENA]
¡û
>WENV181392177
OFRW01007539
[OFRW] seawater metagenome; seawater
486
411
-
Glu
TTC
[ENA]
¡û
>WENV182548067
OJBV01000103
[OJBV] seawater metagenome; Sea water
2313
2238
-
Glu
TTC
[ENA]
¡û
>WENV182565018
OJEF01029142
[OJEF] seawater metagenome; Sea water
385
310
-
Glu
TTC
[ENA]
¡û
>WENV182583922
OJHF01000737
[OJHF] seawater metagenome; Sea water
1296
1221
-
Glu
TTC
[ENA]
¡û
>WENV183616366
OOED01006696
[OOED] marine metagenome; seawater
185
260
+
Glu
TTC
[ENA]
¡û
>WENV183626882
OOGK01006730
[OOGK] marine metagenome; seawater
486
411
-
Glu
TTC
[ENA]
¡û
>WENV183802955
PVBE010800769
[PVBE] marine metagenome; water
477
552
+
Glu
TTC
[ENA]
¡û
>WENV170112049
CEGC01003374
[CEGC] microbial mat metagenome; grass silage
3234
3309
+
Glu
TTC
[ENA]
¡û
>WENV170112181
CEGD01007880
[CEGD] microbial mat metagenome; grass silage
3239
3314
+
Glu
TTC
[ENA]
¡û
>WENV170112223
CEGE01000103
[CEGE] microbial mat metagenome; grass silage
3942
4017
+
Glu
TTC
[ENA]
¡û
>WENV170112225
CEGE01000103
[CEGE] microbial mat metagenome; grass silage
748
673
-
Glu
TTC
[ENA]
¡û
>WENV170112434
CEGE01009946
[CEGE] microbial mat metagenome; grass silage
618
543
-
Glu
TTC
[ENA]
¡û
>WENV170112458
CEGF01000360
[CEGF] microbial mat metagenome; grass silage
5480
5555
+
Glu
TTC
[ENA]
¡û
>WENV170112460
CEGF01000360
[CEGF] microbial mat metagenome; grass silage
2285
2210
-
Glu
TTC
[ENA]
¡û
>WENV170539076
CEWR01147732
[CEWR] marine metagenome genome assembly TARA_085_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
728
653
-
Glu
TTC
[ENA]
¡û
>WENV170566853
FLLY01007713
[FLLY] seawater metagenome; seawater
530
455
-
Glu
TTC
[ENA]
¡û
>WENV170569769
FLMP01297359
[FLMP] seawater metagenome; seawater
485
410
-
Glu
TTC
[ENA]
¡û
>WENV170570136
FLMP01434231
[FLMP] seawater metagenome; seawater
259
334
+
Glu
TTC
[ENA]
¡û
>WENV170625288
FUWD013195269
[FUWD] metagenome; unknown
7059
7134
+
Glu
TTC
[ENA]
¡û
>WENV170625290
FUWD013195269
[FUWD] metagenome; unknown
7499
7574
+
Glu
TTC
[ENA]
¡û
>WENV170633528
FUWD013398081
[FUWD] metagenome; unknown
7059
7134
+
Glu
TTC
[ENA]
¡û
>WENV170633530
FUWD013398081
[FUWD] metagenome; unknown
7499
7574
+
Glu
TTC
[ENA]
¡û
>WENV170655567
JTFN01046757
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
181
106
-
Glu
TTC
[ENA]
¡û
>WENV170655895
JTFN01092361
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
371
446
+
Glu
TTC
[ENA]
¡û
>WENV170656067
JTFN01125149
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
256
331
+
Glu
TTC
[ENA]
¡û
>WENV170656216
JTFO01004862
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
181
106
-
Glu
TTC
[ENA]
¡û
>WENV170656753
JTFO01040546
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
712
787
+
Glu
TTC
[ENA]
¡û
>WENV170656754
JTFO01040547
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
99
24
-
Glu
TTC
[ENA]
¡û
>WENV170656851
JTFO01052191
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
224
299
+
Glu
TTC
[ENA]
¡û
>WENV170658174
JTFP01065586
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
309
384
+
Glu
TTC
[ENA]
¡û
>WENV170658653
JTFP01173695
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
28
103
+
Glu
TTC
[ENA]
¡û
>WENV170828180
MDSY01144519
[MDSY] marine metagenome; seawater
2640
2715
+
Glu
TTC
[ENA]
¡û
>WENV170834230
MDSZ01093963
[MDSZ] marine metagenome; seawater
50186
50111
-
Glu
TTC
[ENA]
¡û
>WENV170948566
MEHZ011226482
[MEHZ] marine metagenome; marine surface water
238
313
+
Glu
TTC
[ENA]
¡û
>W1810196385
PKUR01000002
Gammaproteobacteria
Halioglobus japonicus S1-36 [PKUR]
1072260
1072335
+
Glu
TTC
[ENA]
¡û
>W1810196437
PKUS01000030
Gammaproteobacteria
Pseudohalioglobus lutimaris HF004 [PKUS]
18641
18566
-
Glu
TTC
[ENA]
¡û
>W2010318739
CACSII010000016
Gammaproteobacteria
BD1-7 clade bacterium [CACSII]
293652
293727
+
Glu
TTC
[ENA]
¡û
>W2010318740
CACSII010000016
Gammaproteobacteria
BD1-7 clade bacterium [CACSII]
298812
298887
+
Glu
TTC
[ENA]
¡û
>W2010318945
CACSIN010000023
Gammaproteobacteria
BD1-7 clade bacterium [CACSIN]
92286
92211
-
Glu
TTC
[ENA]
¡û
>W2010318946
CACSIN010000023
Gammaproteobacteria
BD1-7 clade bacterium [CACSIN]
87126
87051
-
Glu
TTC
[ENA]
¡û
>W2010319004
CACSIO010000012
Gammaproteobacteria
BD1-7 clade bacterium [CACSIO]
269602
269677
+
Glu
TTC
[ENA]
¡û
>W2010319005
CACSIO010000012
Gammaproteobacteria
BD1-7 clade bacterium [CACSIO]
274756
274831
+
Glu
TTC
[ENA]
¡û
>W2010683096
JACEMT010000036
Gammaproteobacteria
Marinobacterium sp. 3-1745 [JACEMT]
20021
20096
+
Glu
TTC
[ENA]
¡û
>W2010683098
JACEMT010000036
Gammaproteobacteria
Marinobacterium sp. 3-1745 [JACEMT]
16850
16775
-
Glu
TTC
[ENA]
¡û
>W2010683100
JACEMT010000036
Gammaproteobacteria
Marinobacterium sp. 3-1745 [JACEMT]
16676
16601
-
Glu
TTC
[ENA]
¡û
>W2010683102
JACEMT010000036
Gammaproteobacteria
Marinobacterium sp. 3-1745 [JACEMT]
16499
16424
-
Glu
TTC
[ENA]
¡û
>W2011678627
SRLE01000004
Gammaproteobacteria
Haliea sp. SAOS-164 [SRLE]
182768
182843
+
Glu
TTC
[ENA]
¡û
>W2012146350
VTUX01000011
Gammaproteobacteria
Halioglobus sp. NY5 [VTUX]
35265
35190
-
Glu
TTC
[ENA]
¡û
>W2110030715
BMLT01000003
Gammaproteobacteria
Marinobacterium nitratireducens CGMCC 1.7286 [BMLT]
461269
461194
-
Glu
TTC
[ENA]
¡û
>W2110030717
BMLT01000003
Gammaproteobacteria
Marinobacterium nitratireducens CGMCC 1.7286 [BMLT]
460866
460791
-
Glu
TTC
[ENA]
¡û
>W2110030719
BMLT01000003
Gammaproteobacteria
Marinobacterium nitratireducens CGMCC 1.7286 [BMLT]
415578
415503
-
Glu
TTC
[ENA]
¡û
>W2110049202
BMYL01000009
Gammaproteobacteria
Halioglobus japonicus KCTC 23429 [BMYL]
73998
73923
-
Glu
TTC
[ENA]
¡û
>W2110269404
JACVEW010000042
Gammaproteobacteria
Marinobacterium alkalitolerans AK62 [JACVEW]
6977
7052
+
Glu
TTC
[ENA]
¡û
>W2110639313
JAHQZT010000050
Gammaproteobacteria
Marinobacterium sp. A346 [JAHQZT]
3263
3338
+
Glu
TTC
[ENA]
¡û
>W2110639314
JAHQZT010000050
Gammaproteobacteria
Marinobacterium sp. A346 [JAHQZT]
76
1
-
Glu
TTC
[ENA]
¡û
>C211032081
CP022297
Gammaproteobacteria
Marinobacterium georgiense IC961 [CP022297]
2945826
2945901
+
Glu
TTC
-
¡û
>C211032103
CP022297
Gammaproteobacteria
Marinobacterium georgiense IC961 [CP022297]
2942631
2942556
-
Glu
TTC
-
¡û
>C231313094
CP092123
Gammaproteobacteria
Marinobacterium sediminicola 1.7287 [CP092123]
2579833
2579908
+
Glu
TTC
-
¡û
>C231313109
CP092123
Gammaproteobacteria
Marinobacterium sediminicola 1.7287 [CP092123]
2576647
2576572
-
Glu
TTC
-
¡û
>C231313111
CP092123
Gammaproteobacteria
Marinobacterium sediminicola 1.7287 [CP092123]
2576472
2576397
-
Glu
TTC
-
¡û
>C231313113
CP092123
Gammaproteobacteria
Marinobacterium sediminicola 1.7287 [CP092123]
2576296
2576221
-
Glu
TTC
-
¡û
>W1511576972
LAQF01000047
Gammaproteobacteria
Oceanospirillaceae bacterium ASP10-02a [LAQF]
11461
11536
+
Glu
TTC
[ENA]
¡û
>W11170388
AFPL01000008
Gammaproteobacteria
Marinobacterium stanieri S30 [AFPL]
245889
245814
-
Glu
TTC
[ENA]
¡û
>W1610982729
LWEE01000322
Gammaproteobacteria
Halioglobus sp. HI00S01 [LWEE]
24266
24341
+
Glu
TTC
[ENA]
¡û
>W1710533750
FNRJ01000004
Gammaproteobacteria
Marinobacterium iners DSM 11526 [FNRJ]
9298
9373
+
Glu
TTC
[ENA]
¡û
>W1710533755
FNRJ01000004
Gammaproteobacteria
Marinobacterium iners DSM 11526 [FNRJ]
6101
6026
-
Glu
TTC
[ENA]
¡û
>W1710596349
FTMN01000001
Gammaproteobacteria
Marinobacterium stanieri [FTMN]
398103
398178
+
Glu
TTC
[ENA]
¡û
>W1710596355
FTMN01000001
Gammaproteobacteria
Marinobacterium stanieri [FTMN]
394935
394860
-
Glu
TTC
[ENA]
¡û
>W1710596357
FTMN01000001
Gammaproteobacteria
Marinobacterium stanieri [FTMN]
394755
394680
-
Glu
TTC
[ENA]
¡û
>W1710596359
FTMN01000001
Gammaproteobacteria
Marinobacterium stanieri [FTMN]
394579
394504
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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