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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.291146 (45 seq.)
>W131181438
AROI01000006
Gammaproteobacteria
Halopseudomonas pelagia CL-AP6 [AROI]
183179
183254
+
Asn
GTT
[ENA]
¡û
>W131181466
AROI01000026
Gammaproteobacteria
Halopseudomonas pelagia CL-AP6 [AROI]
47213
47288
+
Asn
GTT
[ENA]
¡û
>WENV170116783
CENH01016653
[CENH] marine metagenome genome assembly TARA_030_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
223
148
-
Asn
GTT
[ENA]
¡û
>WENV170288298
CERX01082690
[CERX] marine metagenome genome assembly TARA_068_DCM_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1599
1674
+
Asn
GTT
[ENA]
¡û
>WENV170315126
CESO01069738
[CESO] marine metagenome genome assembly TARA_093_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
47182
47257
+
Asn
GTT
[ENA]
¡û
>WENV170315500
CESO01131520
[CESO] marine metagenome genome assembly TARA_093_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
772
697
-
Asn
GTT
[ENA]
¡û
>WENV170672157
LAZR01000010
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
302811
302886
+
Asn
GTT
[ENA]
¡û
>WENV170672208
LAZR01000032
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
160680
160605
-
Asn
GTT
[ENA]
¡û
>WENV170763730
LWDU01018022
[LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater
3281
3206
-
Asn
GTT
[ENA]
¡û
>W141462344
JFHS01000001
Gammaproteobacteria
Halopseudomonas bauzanensis [JFHS]
939986
939911
-
Asn
GTT
[ENA]
¡û
>W141462365
JFHS01000005
Gammaproteobacteria
Halopseudomonas bauzanensis [JFHS]
12607
12682
+
Asn
GTT
[ENA]
¡û
>WENV170933960
MDTG01229859
[MDTG] marine metagenome; seawater
3895
3970
+
Asn
GTT
[ENA]
¡û
>W1910634702
LMAZ01000001
Gammaproteobacteria
Pseudomonas gallaeciensis V113 [LMAZ]
167155
167230
+
Asn
GTT
[ENA]
¡û
>W1911398017
NWMT01000175
Gammaproteobacteria
Pseudomonas pelagia 58 [NWMT]
170476
170551
+
Asn
GTT
[ENA]
¡û
>W1911398033
NWMT01000233
Gammaproteobacteria
Pseudomonas pelagia 58 [NWMT]
4121
4196
+
Asn
GTT
[ENA]
¡û
>W1911568256
PCQD01000001
Gammaproteobacteria
Pseudomonas sp. MYb185 [PCQD]
117587
117512
-
Asn
GTT
[ENA]
¡û
>W1810224559
POUN01000002
Gammaproteobacteria
Stutzerimonas stutzeri KC [POUN]
586662
586737
+
Asn
GTT
[ENA]
¡û
>W1810239533
PPSK01000011
Gammaproteobacteria
Halopseudomonas oceani DSM 100277 [PPSK]
149406
149481
+
Asn
GTT
[ENA]
¡û
>W2010780702
LMAZ01000001
Gammaproteobacteria
Pseudomonas gallaeciensis V113 [LMAZ]
167155
167230
+
Asn
GTT
[ENA]
¡û
>W2011134825
NWMT01000175
Gammaproteobacteria
Pseudomonas pelagia 58 [NWMT]
170476
170551
+
Asn
GTT
[ENA]
¡û
>W2011134841
NWMT01000233
Gammaproteobacteria
Pseudomonas pelagia 58 [NWMT]
4121
4196
+
Asn
GTT
[ENA]
¡û
>W2011180472
PCQD01000001
Gammaproteobacteria
Pseudomonas sp. MYb185 [PCQD]
117587
117512
-
Asn
GTT
[ENA]
¡û
>W2011451387
RKKU01000003
Gammaproteobacteria
Pseudomonas sp. SSM26 [RKKU]
187647
187722
+
Asn
GTT
[ENA]
¡û
>W2011451425
RKKU01000021
Gammaproteobacteria
Pseudomonas sp. SSM26 [RKKU]
23371
23446
+
Asn
GTT
[ENA]
¡û
>W2011701471
SWAV01000001
Gammaproteobacteria
Pseudomonas bauzanensis SBBB [SWAV]
937104
937029
-
Asn
GTT
[ENA]
¡û
>W2011701500
SWAV01000005
Gammaproteobacteria
Pseudomonas bauzanensis SBBB [SWAV]
313680
313605
-
Asn
GTT
[ENA]
¡û
>W2012141924
VTPZ01000002
Gammaproteobacteria
Pseudomonas profundi M5 [VTPZ]
28089
28164
+
Asn
GTT
[ENA]
¡û
>W2012141954
VTPZ01000019
Gammaproteobacteria
Pseudomonas profundi M5 [VTPZ]
27095
27170
+
Asn
GTT
[ENA]
¡û
>W2012146528
VTVA01000004
Gammaproteobacteria
Pseudomonas sp. 16W4-4-3 [VTVA]
174232
174307
+
Asn
GTT
[ENA]
¡û
>W2012146544
VTVA01000008
Gammaproteobacteria
Pseudomonas sp. 16W4-4-3 [VTVA]
60715
60640
-
Asn
GTT
[ENA]
¡û
>W2110022356
BMFF01000005
Gammaproteobacteria
Pseudomonas salina CGMCC 1.12482 [BMFF]
210572
210497
-
Asn
GTT
[ENA]
¡û
>W2110022372
BMFF01000014
Gammaproteobacteria
Pseudomonas salina CGMCC 1.12482 [BMFF]
297
222
-
Asn
GTT
[ENA]
¡û
>W2110025571
BMHR01000011
Gammaproteobacteria
Pseudomonas oceani CGMCC 1.15195 [BMHR]
149501
149576
+
Asn
GTT
[ENA]
¡û
>C201053413
CP033116
Gammaproteobacteria
Pseudomonas pelagia Kongs-67 [CP033116]
4091194
4091119
-
Asn
GTT
-
¡û
>C201053420
CP033116
Gammaproteobacteria
Pseudomonas pelagia Kongs-67 [CP033116]
2513611
2513536
-
Asn
GTT
-
¡û
>C201216949
CP048629
Gammaproteobacteria
Pseudomonas sp. OIL-1 [CP048629]
3038244
3038169
-
Asn
GTT
-
¡û
>C201216956
CP048629
Gammaproteobacteria
Pseudomonas sp. OIL-1 [CP048629]
188106
188031
-
Asn
GTT
-
¡û
>C241151297
CP051625
Gammaproteobacteria
Pseudomonas sp. gcc21 [CP051625]
2205480
2205405
-
Asn
GTT
-
¡û
>C241151306
CP051625
Gammaproteobacteria
Pseudomonas sp. gcc21 [CP051625]
862751
862676
-
Asn
GTT
-
¡û
>C241247829
CP123445
Gammaproteobacteria
Halopseudomonas sp. SMJS2 [CP123445]
2954604
2954679
+
Asn
GTT
-
¡û
>C241247843
CP123445
Gammaproteobacteria
Halopseudomonas sp. SMJS2 [CP123445]
1631467
1631392
-
Asn
GTT
-
¡û
>W1710551977
FOGN01000001
Gammaproteobacteria
Halopseudomonas bauzanensis [FOGN]
395312
395237
-
Asn
GTT
[ENA]
¡û
>W1710551986
FOGN01000004
Gammaproteobacteria
Halopseudomonas bauzanensis [FOGN]
12717
12792
+
Asn
GTT
[ENA]
¡û
>W1710568986
FOUA01000001
Gammaproteobacteria
Halopseudomonas bauzanensis [FOUA]
984092
984167
+
Asn
GTT
[ENA]
¡û
>W1710569003
FOUA01000004
Gammaproteobacteria
Halopseudomonas bauzanensis [FOUA]
12760
12835
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK