This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.291326 (8 seq.)
>WENV170474170
CEVH01108171
[CEVH] marine metagenome genome assembly TARA_141_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
140
212
+
Lys
TTT
[ENA]
¡û
>WENV170939826
MDTG01332685
[MDTG] marine metagenome; seawater
564
637
+
Lys
TTT
[ENA]
¡û
>W2010502802
JAALXT010000001
Planctomycetota
Rubinisphaera sp. JC658 [JAALXT]
459696
459769
+
Lys
TTT
[ENA]
¡û
>W2011610119
SJPG01000001
Planctomycetota
Planctomycetes bacterium Pan54 [SJPG]
5592952
5593025
+
Lys
TTT
[ENA]
¡û
>W2012435477
WTPX01000015
Planctomycetota
Alienimonas chondri LzC2 [WTPX]
25019
25092
+
Lys
TTT
[ENA]
¡û
>C11116912
CP002546
Planctomycetota
Rubinisphaera brasiliensis DSM 5305 [CP002546]
1252463
1252390
-
Lys
TTT
[Ensembl]
¡û
>W11138329
AEIC01000013
Planctomycetota
Rubinisphaera brasiliensis DSM 5305 [AEIC]
4990
4917
-
Lys
TTT
[ENA]
¡û
>W1710563979
FOQD01000012
Planctomycetota
Planctomicrobium piriforme [FOQD]
195358
195285
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK