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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.291414 (60 seq.)
>W1710860327
LMCU01000001
Actinomycetota
Leifsonia sp. Root112D2 [LMCU]
2225215
2225290
+
Lys
CTT
[ENA]
¡û
>W131052021
AMYK02000022
Actinomycetota
Micrococcus luteus str. modasa [AMYK]
15696
15771
+
Lys
CTT
[ENA]
¡û
>WENV180016684
FSVT01000123
[FSVT] metagenome; soil
1989
2062
+
Lys
CTT
[ENA]
¡û
>WENV180017273
FSWR01000048
[FSWR] metagenome; soil
32358
32433
+
Lys
CTT
[ENA]
¡û
>WENV180026345
FTIT01002043
[FTIT] metagenome; soil
2392
2467
+
Lys
CTT
[ENA]
¡û
>WENV180029207
FTJI01181318
[FTJI] metagenome; soil
52
125
+
Lys
CTT
[ENA]
¡û
>WENV180029300
FTJI01463382
[FTJI] metagenome; soil
652
577
-
Lys
CTT
[ENA]
¡û
>WENV180034734
FTKR01197295
[FTKR] metagenome; soil
52
125
+
Lys
CTT
[ENA]
¡û
>WENV180034827
FTKR01498117
[FTKR] metagenome; soil
652
577
-
Lys
CTT
[ENA]
¡û
>WENV180690497
OCZS010008601
[OCZS] soil metagenome; soil
1742
1815
+
Lys
CTT
[ENA]
¡û
>WENV182642563
OJLN01005117
[OJLN] metagenome; surface
205
130
-
Lys
CTT
[ENA]
¡û
>WENV170601251
FUWD010163832
[FUWD] metagenome; unknown
431
506
+
Lys
CTT
[ENA]
¡û
>WENV170609074
FUWD011236588
[FUWD] metagenome; unknown
125
198
+
Lys
CTT
[ENA]
¡û
>W141563805
JIAG01000007
Actinomycetota
Haematomicrobium sanguinis DSM 21259 [JIAG]
86796
86721
-
Lys
CTT
[ENA]
¡û
>W141776263
JOKP01000150
Actinomycetota
Micrococcus luteus [JOKP]
5602
5525
-
Lys
CTT
[ENA]
¡û
>W1910500155
FXZA01000014
Actinomycetota
Brevibacterium linens Mu101 [FXZA]
54555
54628
+
Lys
CTT
[ENA]
¡û
>W1910857581
NBXB01000011
Actinomycetota
Subtercola boreus P27479 [NBXB]
246676
246751
+
Lys
CTT
[ENA]
¡û
>W1810167278
PJIJ01000001
Actinomycetota
Arthrobacter sp. ZGTC212 [PJIJ]
1355094
1355019
-
Lys
CTT
[ENA]
¡û
>W1810167279
PJIJ01000001
Actinomycetota
Arthrobacter sp. ZGTC212 [PJIJ]
1354751
1354676
-
Lys
CTT
[ENA]
¡û
>W1810167706
PJIS01000001
Actinomycetota
Arthrobacter sp. 9E06 [PJIS]
24248
24323
+
Lys
CTT
[ENA]
¡û
>W1810167707
PJIS01000001
Actinomycetota
Arthrobacter sp. 9E06 [PJIS]
24590
24665
+
Lys
CTT
[ENA]
¡û
>W1810167757
PJIT01000001
Actinomycetota
Arthrobacter sp. 9E18 [PJIT]
24248
24323
+
Lys
CTT
[ENA]
¡û
>W1810167758
PJIT01000001
Actinomycetota
Arthrobacter sp. 9E18 [PJIT]
24590
24665
+
Lys
CTT
[ENA]
¡û
>W1810167808
PJIU01000001
Actinomycetota
Arthrobacter sp. 9E16 [PJIU]
24248
24323
+
Lys
CTT
[ENA]
¡û
>W1810167809
PJIU01000001
Actinomycetota
Arthrobacter sp. 9E16 [PJIU]
24590
24665
+
Lys
CTT
[ENA]
¡û
>W1810167955
PJIX01000001
Actinomycetota
Arthrobacter sp. 08Y14 [PJIX]
24174
24249
+
Lys
CTT
[ENA]
¡û
>W1810167956
PJIX01000001
Actinomycetota
Arthrobacter sp. 08Y14 [PJIX]
24516
24591
+
Lys
CTT
[ENA]
¡û
>W1810168760
PJJM01000101
Actinomycetota
Cryobacterium sp. Y50 [PJJM]
24053
24128
+
Lys
CTT
[ENA]
¡û
>W2010419763
FXYY01000002
Actinomycetota
Brevibacterium linens ATCC 9172 [FXYY]
22901
22828
-
Lys
CTT
[ENA]
¡û
>W2010599433
JABFOE010000001
Actinomycetota
Arthrobacter sp. 260 [JABFOE]
515950
515877
-
Lys
CTT
[ENA]
¡û
>W2010668554
JACBZP010000001
Actinomycetota
Spelaeicoccus albus DSM 26341 [JACBZP]
2045764
2045691
-
Lys
CTT
[ENA]
¡û
>W2010709344
JACHMC010000001
Actinomycetota
Micrococcus flavus DSM 19079 [JACHMC]
1473020
1473093
+
Lys
CTT
[ENA]
¡û
>W2010710408
JACHMW010000001
Actinomycetota
Micrococcus endophyticus DSM 17945 [JACHMW]
1130263
1130338
+
Lys
CTT
[ENA]
¡û
>W2010710641
JACHNA010000001
Actinomycetota
Micrococcus cohnii DSM 23974 [JACHNA]
532772
532699
-
Lys
CTT
[ENA]
¡û
>W2010936320
NBXB01000011
Actinomycetota
Subtercola boreus P27479 [NBXB]
246676
246751
+
Lys
CTT
[ENA]
¡û
>W2011411713
RDSR01000017
Actinomycetota
Cryobacterium sp. NEAU-85 [RDSR]
23884
23959
+
Lys
CTT
[ENA]
¡û
>W2011580380
SHLA01000001
Actinomycetota
Zhihengliuella halotolerans DSM 17364 [SHLA]
1327174
1327249
+
Lys
CTT
[ENA]
¡û
>W2011670725
SPKR01000470
Actinomycetota
Micrococcus endophyticus BCRC 16908 [SPKR]
671
596
-
Lys
CTT
[ENA]
¡û
>W2011670753
SPKS01000001
Actinomycetota
Micrococcus flavus BCRC 80069 [SPKS]
416671
416744
+
Lys
CTT
[ENA]
¡û
>W2011993668
VDZA01000008
Actinomycetota
Micrococcus luteus DE0384 [VDZA]
65972
66047
+
Lys
CTT
[ENA]
¡û
>W2012139474
VTFU01000002
Actinomycetota
Arthrobacter gandavensis JCM 13316 [VTFU]
29436
29511
+
Lys
CTT
[ENA]
¡û
>W2012139475
VTFU01000002
Actinomycetota
Arthrobacter gandavensis JCM 13316 [VTFU]
29792
29867
+
Lys
CTT
[ENA]
¡û
>W2110029809
BMLA01000001
Actinomycetota
Micrococcus flavus CGMCC 1.5361 [BMLA]
650837
650910
+
Lys
CTT
[ENA]
¡û
>W2110484823
JAFEMX010000004
Actinomycetota
Micrococcaceae bacterium RIT 802 [JAFEMX]
66373
66300
-
Lys
CTT
[ENA]
¡û
>W2110515729
JAFMSO010000007
Actinomycetota
Arthrobacter sp. zg-ZUI10 [JAFMSO]
24154
24229
+
Lys
CTT
[ENA]
¡û
>W2110515730
JAFMSO010000007
Actinomycetota
Arthrobacter sp. zg-ZUI10 [JAFMSO]
24497
24572
+
Lys
CTT
[ENA]
¡û
>W2110515772
JAFMSP010000006
Actinomycetota
Arthrobacter sp. zg-ZUI122 [JAFMSP]
411744
411669
-
Lys
CTT
[ENA]
¡û
>W2110515773
JAFMSP010000006
Actinomycetota
Arthrobacter sp. zg-ZUI122 [JAFMSP]
411401
411326
-
Lys
CTT
[ENA]
¡û
>W2110541198
JAGGMZ010000001
Actinomycetota
Arthrobacter sp. CAN_C5 [JAGGMZ]
1442195
1442120
-
Lys
CTT
[ENA]
¡û
>W2110553777
JAGIOF010000001
Actinomycetota
Paeniglutamicibacter kerguelensis DSM 15797 [JAGIOF]
1156350
1156277
-
Lys
CTT
[ENA]
¡û
>W2110553778
JAGIOF010000001
Actinomycetota
Paeniglutamicibacter kerguelensis DSM 15797 [JAGIOF]
1156010
1155937
-
Lys
CTT
[ENA]
¡û
>W2110553779
JAGIOF010000001
Actinomycetota
Paeniglutamicibacter kerguelensis DSM 15797 [JAGIOF]
1153301
1153228
-
Lys
CTT
[ENA]
¡û
>C211341291
CP076022
Actinomycetota
Arthrobacter sp. zg-ZUI227 [CP076022]
2478813
2478886
+
Lys
CTT
-
¡û
>C211341292
CP076022
Actinomycetota
Arthrobacter sp. zg-ZUI227 [CP076022]
2479169
2479242
+
Lys
CTT
-
¡û
>C211405789
CP083691
Actinomycetota
Micrococcus sp. KD337-16 [CP083691]
2126513
2126588
+
Lys
CTT
-
¡û
>C231334583
CP093443
Actinomycetota
Brevibacterium sp. WHS-Z9 [CP093443]
2861654
2861727
+
Lys
CTT
-
¡û
>C231361246
CP095461
Actinomycetota
Arthrobacter sp. zg-Y809 [CP095461]
2556594
2556667
+
Lys
CTT
-
¡û
>C231361247
CP095461
Actinomycetota
Arthrobacter sp. zg-Y809 [CP095461]
2570221
2570296
+
Lys
CTT
-
¡û
>W2110761209
QSNM01000046
Actinomycetota
Arthrobacter sp. AET 35A [QSNM]
17838
17911
+
Lys
CTT
[ENA]
¡û
>W1511524516
JYFC01000005
Actinomycetota
Agreia bicolorata VKM Ac-1804 [JYFC]
280281
280206
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK