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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.291442 (25 seq.)
>W131082832
ANZB01000009
Bacillota
Clostridium pasteurianum DSM 525 [ANZB]
155490
155565
+
Lys
CTT
[ENA]
¡û
>C171019461
CP013018
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP013018]
1455498
1455573
+
Lys
CTT
-
¡û
>C171019540
CP013019
Bacillota
Clostridium pasteurianum M150B [CP013019]
1454533
1454608
+
Lys
CTT
-
¡û
>WENV180477004
OBYZ01000109
[OBYZ] human gut metagenome; faeces
38071
37998
-
Lys
CTT
[ENA]
¢þ
>WENV180600809
OCPQ01001435
[OCPQ] human gut metagenome; faeces
332
259
-
Lys
CTT
[ENA]
¢þ
>WENV181684316
OGOV01007099
[OGOV] human gut metagenome; faeces
677
750
+
Lys
CTT
[ENA]
¢þ
>WENV181744405
OGQM01000535
[OGQM] human gut metagenome; faeces
2890
2963
+
Lys
CTT
[ENA]
¢þ
>WENV181783145
OGRL01000941
[OGRL] human gut metagenome; faeces
8620
8547
-
Lys
CTT
[ENA]
¢þ
>WENV181796669
OGRU01000065
[OGRU] human gut metagenome; faeces
27570
27643
+
Lys
CTT
[ENA]
¢þ
>WENV181824214
OGUK01000385
[OGUK] human gut metagenome; faeces
1254
1327
+
Lys
CTT
[ENA]
¢þ
>WENV181831668
OGUP01001146
[OGUP] human gut metagenome; faeces
821
894
+
Lys
CTT
[ENA]
¢þ
>WENV181922940
OGYK01024479
[OGYK] human gut metagenome; faeces
641
569
-
Lys
CTT
[ENA]
¢þ
>WENV182295061
OHWE01009876
[OHWE] human gut metagenome; feces
160
87
-
Lys
CTT
[ENA]
¢þ
>WENV182374108
OIDA01009349
[OIDA] human gut metagenome; feces
447
374
-
Lys
CTT
[ENA]
¢þ
>WENV182469826
OIPE01010161
[OIPE] human gut metagenome; human gut
636
563
-
Lys
CTT
[ENA]
¢þ
>WENV183070329
OLIR01036617
[OLIR] metagenome; faeces
544
471
-
Lys
CTT
[ENA]
¢þ
>WENV183108656
OLNN01000485
[OLNN] human gut metagenome; faeces
40511
40584
+
Lys
CTT
[ENA]
¢þ
>WENV183574123
OOCH01002930
[OOCH] human gut metagenome; human gut
7000
6927
-
Lys
CTT
[ENA]
¢þ
>WENV183637695
OQVH01001134
[OQVH] human gut metagenome; human gut
5539
5612
+
Lys
CTT
[ENA]
¢þ
>W141803779
JPGY01000007
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [JPGY]
105581
105506
-
Lys
CTT
[ENA]
¡û
>W1810085602
PETE01000002
Bacillota
Clostridium sp. CT7 [PETE]
3517846
3517921
+
Lys
CTT
[ENA]
¡û
>C151047037
CP009267
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009267]
1454537
1454612
+
Lys
CTT
[Ensembl]
¡û
>C151047116
CP009268
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009268]
1454537
1454612
+
Lys
CTT
[Ensembl]
¡û
>C131002522
CP003261
Bacillota
Clostridium pasteurianum BC1 [CP003261]
1525805
1525880
+
Lys
CTT
[Ensembl]
¡û
>C131002509
CP003261
Bacillota
Clostridium pasteurianum BC1 [CP003261]
1524448
1524523
+
Lys
CTT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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