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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.291814 (90 seq.)
>W1710786961
LJJF01000001
Actinomycetota
Streptomyces sp. MJM8645 [LJJF]
3280749
3280674
-
Arg
CCT
[ENA]
¡û
>W1710860254
LMCT01000001
Actinomycetota
Kitasatospora sp. Root107 [LMCT]
519115
519042
-
Arg
CCT
[ENA]
¡û
>W1710866967
LMHX01000023
Actinomycetota
Kitasatospora sp. Root187 [LMHX]
244711
244784
+
Arg
CCT
[ENA]
¡û
>W1711183414
LWLA01000014
Actinomycetota
Streptomyces sp. CB03911 [LWLA]
101218
101291
+
Arg
CCT
[ENA]
¡û
>C171002037
CP009248
Actinomycetota
Corynebacterium sphenisci DSM 44792 [CP009248]
2080704
2080779
+
Arg
CCT
-
¡û
>WENV180018868
FTAW01000035
[FTAW] metagenome; soil
8
81
+
Arg
CCT
[ENA]
¡û
>WENV180023339
FTHV01000558
[FTHV] metagenome; soil
1224
1151
-
Arg
CCT
[ENA]
¡û
>WENV180023468
FTHY01000544
[FTHY] metagenome; soil
1224
1151
-
Arg
CCT
[ENA]
¡û
>WENV180028645
FTJE01372912
[FTJE] metagenome; soil
1389
1462
+
Arg
CCT
[ENA]
¡û
>WENV180033139
FTKF01000037
[FTKF] metagenome; soil
1755
1828
+
Arg
CCT
[ENA]
¡û
>WENV180033149
FTKF01001421
[FTKF] metagenome; soil
6131
6058
-
Arg
CCT
[ENA]
¡û
>WENV180033174
FTKF01009600
[FTKF] metagenome; soil
117
191
+
Arg
CCT
[ENA]
¡û
>WENV180033598
FTKL01000369
[FTKL] metagenome; soil
6973
6900
-
Arg
CCT
[ENA]
¡û
>W141282699
JAIY01000004
Actinomycetota
Kitasatospora sp. MBT66 [JAIY]
89497
89424
-
Arg
CCT
[ENA]
¡û
>W141282746
JAIZ01000016
Actinomycetota
Kitasatospora sp. MBT63 [JAIZ]
2588
2661
+
Arg
CCT
[ENA]
¡û
>WENV170565590
FJVZ01000733
[FJVZ] metagenome; soil
6525
6452
-
Arg
CCT
[ENA]
¡û
>C181116297
CP025394
Actinomycetota
Kitasatospora sp. MMS16-BH015 [CP025394]
5252577
5252650
+
Arg
CCT
-
¡û
>W141730404
JNIH01000066
Actinomycetota
Streptomyces sp. URHA0041 [JNIH]
2793
2718
-
Arg
CCT
[ENA]
¡û
>W141756141
JNWZ01000020
Actinomycetota
Kitasatospora phosalacinea [JNWZ]
93464
93539
+
Arg
CCT
[ENA]
¡û
>W141757013
JNXO01001382
Actinomycetota
Kitasatospora misakiensis [JNXO]
880
953
+
Arg
CCT
[ENA]
¡û
>W141757819
JNYE01000014
Actinomycetota
Kitasatospora phosalacinea [JNYE]
63787
63860
+
Arg
CCT
[ENA]
¡û
>W141760903
JOAI01000093
Actinomycetota
Streptomyces sp. NRRL B-24484 [JOAI]
1815
1888
+
Arg
CCT
[ENA]
¡û
>W141761919
JOBB01000528
Actinomycetota
Kitasatospora purpeofusca purpeofuscus [JOBB]
744
671
-
Arg
CCT
[ENA]
¡û
>W141765019
JODB01007596
Actinomycetota
Streptomyces sp. NRRL S-426 [JODB]
911
984
+
Arg
CCT
[ENA]
¡û
>W141766007
JODS01000007
Actinomycetota
Kitasatospora purpeofusca purpeofuscus [JODS]
47866
47793
-
Arg
CCT
[ENA]
¡û
>W141770061
JOGF01003749
Actinomycetota
Streptomyces sp. NRRL S-984 [JOGF]
239
166
-
Arg
CCT
[ENA]
¡û
>W141771140
JOGY01001867
Actinomycetota
Streptomyces sp. NRRL S-1777 [JOGY]
311
238
-
Arg
CCT
[ENA]
¡û
>W141771937
JOHN01000003
Actinomycetota
Streptomyces sp. NRRL F-6131 [JOHN]
135391
135464
+
Arg
CCT
[ENA]
¡û
>W141772021
JOHO01000008
Actinomycetota
Streptomyces sp. NRRL S-350 [JOHO]
168988
169063
+
Arg
CCT
[ENA]
¡û
>W141772644
JOHY01000006
Actinomycetota
Streptomyces sp. NRRL F-5123 [JOHY]
129406
129333
-
Arg
CCT
[ENA]
¡û
>W141774388
JOJA01000055
Actinomycetota
Streptomyces sp. NRRL S-384 [JOJA]
409
482
+
Arg
CCT
[ENA]
¡û
>W141818506
JQLN01000005
Actinomycetota
Kitasatospora mediocidica KCTC 9733 [JQLN]
854882
854809
-
Arg
CCT
[ENA]
¡û
>W141819674
JQMJ01000004
Actinomycetota
Streptacidiphilus rugosus AM-16 [JQMJ]
3587481
3587408
-
Arg
CCT
[ENA]
¡û
>W141819802
JQML01000001
Actinomycetota
Streptacidiphilus albus JL83 [JQML]
3978583
3978510
-
Arg
CCT
[ENA]
¡û
>W141821643
JQNR01000005
Actinomycetota
Actinacidiphila yeochonensis CN732 [JQNR]
205036
205109
+
Arg
CCT
[ENA]
¡û
>W1911243769
NSGV01000001
Actinomycetota
Streptomyces sp. TLI_235 [NSGV]
3297276
3297203
-
Arg
CCT
[ENA]
¡û
>W1810120768
PHTW01000001
Actinomycetota
Streptomyces sp. 4121.5 [PHTW]
3332102
3332029
-
Arg
CCT
[ENA]
¡û
>W1810121550
PHUK01000001
Actinomycetota
Kitasatospora sp. OK780 [PHUK]
3463942
3463869
-
Arg
CCT
[ENA]
¡û
>W1810684537
QKYN01000066
Actinomycetota
Streptacidiphilus pinicola MMS16-CNU450 [QKYN]
34768
34695
-
Arg
CCT
[ENA]
¡û
>W1810694022
QLLT01000020
Actinomycetota
Kitasatospora sp. SolWspMP-SS2h [QLLT]
134054
133981
-
Arg
CCT
[ENA]
¡û
>W2010565914
JAATEJ010000041
Actinomycetota
Streptomyces sp. PRB2-1 [JAATEJ]
41614
41687
+
Arg
CCT
[ENA]
¡û
>W2010705671
JACHJR010000001
Actinomycetota
Kitasatospora gansuensis DSM 44786 [JACHJR]
3317309
3317236
-
Arg
CCT
[ENA]
¡û
>W2011069128
NSGV01000001
Actinomycetota
Streptomyces sp. TLI_235 [NSGV]
3297276
3297203
-
Arg
CCT
[ENA]
¡û
>W2011491073
RSFG01000002
Actinomycetota
Streptomyces sp. CB01881 [RSFG]
1345600
1345527
-
Arg
CCT
[ENA]
¡û
>W2011696852
SUMC01000068
Actinomycetota
Streptomyces sp. NEAU-C40 [SUMC]
33891
33964
+
Arg
CCT
[ENA]
¡û
>W2012047337
VIVR01000001
Actinomycetota
Kitasatospora atroaurantiaca DSM 41649 [VIVR]
4505080
4505153
+
Arg
CCT
[ENA]
¡û
>W2012230643
WBOF01000001
Actinomycetota
Streptomyces kaniharaensis SF-557 [WBOF]
3436962
3437035
+
Arg
CCT
[ENA]
¡û
>W2012476232
WWIW01000292
Actinomycetota
Streptomyces sp. SID4948 [WWIW]
28609
28682
+
Arg
CCT
[ENA]
¡û
>W2110039443
BMSD01000014
Actinomycetota
Kitasatospora herbaricolor JCM 4138 [BMSD]
24978
24905
-
Arg
CCT
[ENA]
¡û
>W2110053245
BNBO01000008
Actinomycetota
Streptomyces indigoferus JCM 4646 [BNBO]
22220
22147
-
Arg
CCT
[ENA]
¡û
>W2110053854
BNBY01000038
Actinomycetota
Kitasatospora xanthocidica JCM 4862 [BNBY]
29739
29812
+
Arg
CCT
[ENA]
¡û
>W2110371170
JADPRT010000003
Actinomycetota
Streptacidiphilus fuscans NEAU-YB345 [JADPRT]
210639
210565
-
Arg
CCT
[ENA]
¡û
>W2110493653
JAFFIX010000022
Actinomycetota
Streptomyces bryophytorum DSM 42138 [JAFFIX]
20567
20640
+
Arg
CCT
[ENA]
¡û
>W2110556220
JAGIYX010000010
Actinomycetota
Kitasatospora sp. RG8 [JAGIYX]
189612
189685
+
Arg
CCT
[ENA]
¡û
>W2110645383
JAHTKP010000013
Actinomycetota
Kitasatospora aureofaciens CPD02 [JAHTKP]
106741
106814
+
Arg
CCT
[ENA]
¡û
>W2110689528
JAINVH010000003
Actinomycetota
Streptomyces sp. HPF1205 [JAINVH]
200657
200730
+
Arg
CCT
[ENA]
¡û
>C201213296
CP048289
Actinomycetota
Streptacidiphilus sp. P02-A3a [CP048289]
948662
948735
+
Arg
CCT
-
¡û
>C201215026
CP048405
Actinomycetota
Streptacidiphilus sp. PB12-B1b [CP048405]
848156
848229
+
Arg
CCT
-
¡û
>C211000395
AP018365
Actinomycetota
Streptomyces sp. SN-593 [AP018365]
3283235
3283308
+
Arg
CCT
-
¡û
>W1510013983
BBPL01000062
Actinomycetota
Streptacidiphilus albus NBRC 100918 [BBPL]
18937
19010
+
Arg
CCT
[ENA]
¡û
>W1510014111
BBPN01000038
Actinomycetota
Streptacidiphilus jiangxiensis NBRC 100920 [BBPN]
28037
27964
-
Arg
CCT
[ENA]
¡û
>W1510014163
BBPO01000044
Actinomycetota
Streptacidiphilus neutrinimicus NBRC 100921 [BBPO]
32817
32742
-
Arg
CCT
[ENA]
¡û
>W1510014228
BBPP01000030
Actinomycetota
Streptacidiphilus melanogenes NBRC 103184 [BBPP]
39340
39413
+
Arg
CCT
[ENA]
¡û
>W1510014314
BBPQ01000050
Actinomycetota
Streptacidiphilus anmyonensis NBRC 103185 [BBPQ]
697
624
-
Arg
CCT
[ENA]
¡û
>C231480273
CP103871
Actinomycetota
Actinacidiphila bryophytorum DS3 [CP103871]
965218
965145
-
Arg
CCT
-
¡û
>C231668898
OX419519
Actinomycetota
Kitasatospora sp. DSM 114396 [OX419519]
4533392
4533465
+
Arg
CCT
-
¡û
>C241202853
CP107913
Actinomycetota
Streptomyces sp. NBC_00448 [CP107913]
3922372
3922445
+
Arg
CCT
-
¡û
>C241203380
CP107926
Actinomycetota
Streptomyces sp. NBC_00433 [CP107926]
5919883
5919810
-
Arg
CCT
-
¡û
>C241209745
CP108460
Actinomycetota
Kitasatospora herbaricolor NBC_01265 [CP108460]
5311552
5311479
-
Arg
CCT
-
¡û
>C241209812
CP108462
Actinomycetota
Streptomyces sp. NBC_01262 [CP108462]
5871997
5871924
-
Arg
CCT
-
¡û
>C241210176
CP108482
Actinomycetota
Kitasatospora herbaricolor NBC_01247 [CP108482]
4360717
4360790
+
Arg
CCT
-
¡û
>C241210261
CP108484
Actinomycetota
Kitasatospora sp. NBC_01246 [CP108484]
5045117
5045190
+
Arg
CCT
-
¡û
>C241211685
CP108561
Actinomycetota
Kitasatospora purpeofusca NBC_01203 [CP108561]
5649914
5649987
+
Arg
CCT
-
¡û
>C241211755
CP108562
Actinomycetota
Kitasatospora purpeofusca NBC_01202 [CP108562]
5706763
5706836
+
Arg
CCT
-
¡û
>C241211953
CP108568
Actinomycetota
Streptomyces sp. NBC_01198 [CP108568]
5011934
5011861
-
Arg
CCT
-
¡û
>C241213354
CP109018
Actinomycetota
Streptomyces sp. NBC_00669 [CP109018]
5629675
5629602
-
Arg
CCT
-
¡û
>C241216391
CP109445
Actinomycetota
Streptomyces sp. NBC_01477 [CP109445]
5559279
5559206
-
Arg
CCT
-
¡û
>C241321829
CP134877
Actinomycetota
Kitasatospora sp. CM 4170 [CP134877]
5337407
5337480
+
Arg
CCT
-
¡û
>W2310028112
BSRX01000018
Actinomycetota
Kitasatospora phosalacinea NBRC 14362 [BSRX]
63999
64072
+
Arg
CCT
[ENA]
¡û
>W1511529111
JYJF01000215
Actinomycetota
Saccharothrix sp. ST-888 [JYJF]
3487
3560
+
Arg
CCT
[ENA]
¡û
>W1511555611
JZWY01000001
Actinomycetota
Streptomyces sp. NRRL S-495 [JZWY]
127
54
-
Arg
CCT
[ENA]
¡û
>W1511687928
LFVW01000539
Actinomycetota
Kitasatospora sp. MY 5-36 [LFVW]
5446
5521
+
Arg
CCT
[ENA]
¡û
>W1610650816
LJJF01000001
Actinomycetota
Streptomyces sp. MJM8645 [LJJF]
3280749
3280674
-
Arg
CCT
[ENA]
¡û
>W1610722600
LMCT01000001
Actinomycetota
Kitasatospora sp. Root107 [LMCT]
519115
519042
-
Arg
CCT
[ENA]
¡û
>W1610729313
LMHX01000023
Actinomycetota
Kitasatospora sp. Root187 [LMHX]
244711
244784
+
Arg
CCT
[ENA]
¡û
>W1710539929
FNVU01000004
Actinomycetota
Actinacidiphila yanglinensis [FNVU]
487438
487365
-
Arg
CCT
[ENA]
¡û
>W1710544682
FOAZ01000005
Actinomycetota
Streptacidiphilus jiangxiensis [FOAZ]
84515
84588
+
Arg
CCT
[ENA]
¡û
>W1710590859
FRBI01000007
Actinomycetota
Actinacidiphila paucisporea paucisporeus [FRBI]
95557
95482
-
Arg
CCT
[ENA]
¡û
>W1710765802
LIPD01000002
Actinomycetota
Streptomyces sp. CB02056 [LIPD]
37204
37279
+
Arg
CCT
[ENA]
¡û
>W1710769513
LISX01000004
Actinomycetota
Kitasatospora sp. CB01950 [LISX]
356105
356030
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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