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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.292015 (9 seq.)
>WENV180301020
OBJE01001182
[OBJE] human gut metagenome; faeces
11385
11460
+
Ile
TAT
[ENA]
¡û
>WENV182013579
OHBO01001609
[OHBO] human gut metagenome; feces
5210
5135
-
Ile
TAT
[ENA]
¡û
>WENV182019891
OHBZ01001914
[OHBZ] human gut metagenome; feces
687
762
+
Ile
TAT
[ENA]
¡û
>WENV182032494
OHCU01024316
[OHCU] human gut metagenome; feces
212
137
-
Ile
TAT
[ENA]
¡û
>WENV182047718
OHDY01000373
[OHDY] human gut metagenome; feces
836
761
-
Ile
TAT
[ENA]
¡û
>WENV182078887
OHGB01000943
[OHGB] human gut metagenome; feces
372
447
+
Ile
TAT
[ENA]
¡û
>WENV182114689
OHIZ01002081
[OHIZ] human gut metagenome; feces
808
883
+
Ile
TAT
[ENA]
¡û
>WENV182156929
OHLV01023257
[OHLV] human gut metagenome; feces
312
237
-
Ile
TAT
[ENA]
¡û
>WENV182157170
OHLW01003656
[OHLW] human gut metagenome; feces
677
752
+
Ile
TAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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