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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.292025 (18 seq.)
>WENV180807955
ODJI01022237
[ODJI] human metagenome; G_DNA_Tongue dorsum
518
593
+
Phe
GAA
[ENA]
¡û
>WENV180833060
ODKC01012297
[ODKC] human metagenome; G_DNA_Supragingival plaque
1366
1291
-
Phe
GAA
[ENA]
¡û
>WENV180853125
ODKW01031561
[ODKW] human metagenome; G_DNA_Tongue dorsum
126
201
+
Phe
GAA
[ENA]
¡û
>WENV180858770
ODLC01030310
[ODLC] human metagenome; G_DNA_Tongue dorsum
437
362
-
Phe
GAA
[ENA]
¡û
>WENV180928497
ODTM01065274
[ODTM] human metagenome; G_DNA_Supragingival plaque
392
317
-
Phe
GAA
[ENA]
¡û
>WENV180935236
ODTS01133056
[ODTS] human metagenome; G_DNA_Subgingival plaque
125
200
+
Phe
GAA
[ENA]
¡û
>WENV180987798
ODVK01139545
[ODVK] human metagenome; G_DNA_Supragingival plaque
130
55
-
Phe
GAA
[ENA]
¡û
>WENV180991232
ODVN01029372
[ODVN] human metagenome; G_DNA_Tongue dorsum
173
248
+
Phe
GAA
[ENA]
¡û
>WENV181085786
OEAX01070291
[OEAX] human metagenome; G_DNA_Tongue dorsum
243
168
-
Phe
GAA
[ENA]
¡û
>WENV181142144
OEGT01110076
[OEGT] human metagenome; G_DNA_Throat
214
139
-
Phe
GAA
[ENA]
¡û
>WENV181158793
OEIH01009649
[OEIH] human metagenome; G_DNA_Supragingival plaque
1599
1674
+
Phe
GAA
[ENA]
¡û
>WENV182090208
OHHB01030884
[OHHB] human gut metagenome; feces
8
83
+
Phe
GAA
[ENA]
¡û
>W10127828
AEES01000075
Bacillota
[Eubacterium] yurii subsp. margaretiae ATCC 43715 [AEES]
1481
1556
+
Phe
GAA
[ENA]
¡û
>W11135316
AEES01000075
Bacillota
[Eubacterium] yurii subsp. margaretiae ATCC 43715 [AEES]
1481
1556
+
Phe
GAA
[ENA]
¡û
>W121007158
AFZE01000044
Bacillota
Peptoanaerobacter stomatis ACC19a [AFZE]
1807
1882
+
Phe
GAA
[ENA]
¡û
>W121007204
AFZF01000031
Bacillota
Peptoanaerobacter stomatis CM2 [AFZF]
1964
2039
+
Phe
GAA
[ENA]
¡û
>W121007250
AFZG01000082
Bacillota
Peptoanaerobacter stomatis CM5 [AFZG]
1839
1914
+
Phe
GAA
[ENA]
¡û
>W1710604156
FUZS01000036
Bacillota
[Eubacterium] yurii [FUZS]
1473
1548
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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