This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.292076 (81 seq.)
>W1710859944
LMCM01000007
Actinomycetota
Phycicoccus sp. Root101 [LMCM]
32959
33033
+
Asp
GTC
[ENA]
¡û
>W1710865196
LMGM01000001
Actinomycetota
Phycicoccus sp. Root563 [LMGM]
2739028
2738954
-
Asp
GTC
[ENA]
¡û
>W1710866819
LMHU01000001
Actinomycetota
Terrabacter sp. Root181 [LMHU]
932224
932148
-
Asp
GTC
[ENA]
¡û
>W1710868145
LMIW01000001
Actinomycetota
Terrabacter sp. Root85 [LMIW]
478594
478670
+
Asp
GTC
[ENA]
¡û
>W1710880081
LMSC01000008
Actinomycetota
Phycicoccus sp. Soil748 [LMSC]
238276
238202
-
Asp
GTC
[ENA]
¡û
>W1710880980
LMSS01000003
Actinomycetota
Phycicoccus sp. Soil802 [LMSS]
225147
225071
-
Asp
GTC
[ENA]
¡û
>W1710881047
LMST01000001
Actinomycetota
Phycicoccus sp. Soil803 [LMST]
521790
521714
-
Asp
GTC
[ENA]
¡û
>W1710881171
LMSW01000011
Actinomycetota
Terrabacter sp. Soil810 [LMSW]
22713
22637
-
Asp
GTC
[ENA]
¡û
>W1710881185
LMSX01000001
Actinomycetota
Terrabacter sp. Soil811 [LMSX]
937918
937994
+
Asp
GTC
[ENA]
¡û
>W1711092640
LTEH01000002
Actinomycetota
Actinomyces sp. HMSC075B09 [LTEH]
329727
329803
+
Asp
GTC
[ENA]
¡û
>W1711092641
LTEH01000002
Actinomycetota
Actinomyces sp. HMSC075B09 [LTEH]
329984
330058
+
Asp
GTC
[ENA]
¡û
>W1711112262
LTXG01000024
Actinomycetota
Actinomyces sp. HMSC065F11 [LTXG]
44025
43949
-
Asp
GTC
[ENA]
¡û
>W1711112263
LTXG01000024
Actinomycetota
Actinomyces sp. HMSC065F11 [LTXG]
43770
43696
-
Asp
GTC
[ENA]
¡û
>W1711312316
MAST01000023
Actinomycetota
Humibacillus sp. DSM 29435 [MAST]
143395
143469
+
Asp
GTC
[ENA]
¡û
>W1711517436
MLJO01000022
Actinomycetota
Intrasporangium flavum flava [MLJO]
4140
4216
+
Asp
GTC
[ENA]
¡û
>W131001231
AGWN01000001
Actinomycetota
Gleimia europaea ACS-120-V-Col10b [AGWN]
999900
999976
+
Asp
GTC
[ENA]
¡û
>W131001232
AGWN01000001
Actinomycetota
Gleimia europaea ACS-120-V-Col10b [AGWN]
1000157
1000231
+
Asp
GTC
[ENA]
¡û
>W131185523
ARTT01000010
Actinomycetota
Terracoccus sp. 273MFTsu3.1 [ARTT]
1105353
1105277
-
Asp
GTC
[ENA]
¡û
>W131224324
AUCS01000002
Actinomycetota
Dermatophilus congolensis DSM 44180 = NBRC 105199 [AUCS]
684470
684546
+
Asp
GTC
[ENA]
¡û
>W131227560
AUFG01000007
Actinomycetota
Arsenicicoccus bolidensis DSM 15745 [AUFG]
33032
33108
+
Asp
GTC
[ENA]
¡û
>WENV180357637
OBNN01051011
[OBNN] marine metagenome; Coastal water
293
369
+
Asp
GTC
[ENA]
¢þ
>WENV180395632
OBPT01057072
[OBPT] marine metagenome; ENVO:00002010 seawater
326
400
+
Asp
GTC
[ENA]
¢þ
>WENV181171214
OEIV010171056
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
406
482
+
Asp
GTC
[ENA]
¢þ
>WENV181311847
OFJB01015974
[OFJB] sludge metagenome; sludge
1259
1183
-
Asp
GTC
[ENA]
¢þ
>W141142491
AWQS01000093
Actinomycetota
Intrasporangium chromatireducens Q5-1 [AWQS]
746
820
+
Asp
GTC
[ENA]
¡û
>W141143059
AWSA01000009
Actinomycetota
Intrasporangium oryzae NRRL B-24470 [AWSA]
85572
85648
+
Asp
GTC
[ENA]
¡û
>WENV181805591
OGSJ01000058
[OGSJ] human gut metagenome; fecal sample 6 from infant 6
59309
59235
-
Asp
GTC
[ENA]
¢þ
>WENV181809550
OGST01000481
[OGST] human gut metagenome; fecal sample 7 from infant 6
18007
18083
+
Asp
GTC
[ENA]
¢þ
>WENV181809551
OGST01000481
[OGST] human gut metagenome; fecal sample 7 from infant 6
18263
18337
+
Asp
GTC
[ENA]
¢þ
>WENV182407360
OIFD01000001
[OIFD] human gut metagenome; stool
352898
352822
-
Asp
GTC
[ENA]
¢þ
>WENV182407361
OIFD01000001
[OIFD] human gut metagenome; stool
352642
352568
-
Asp
GTC
[ENA]
¢þ
>WENV182413238
OIFX01000191
[OIFX] human gut metagenome; stool
5643
5719
+
Asp
GTC
[ENA]
¢þ
>WENV182413239
OIFX01000191
[OIFX] human gut metagenome; stool
5900
5974
+
Asp
GTC
[ENA]
¢þ
>WENV182645392
OJLY01015498
[OJLY] metagenome; surface
239
313
+
Asp
GTC
[ENA]
¢þ
>WENV182809656
OJWS01000012
[OJWS] human gut metagenome; human gut
100453
100379
-
Asp
GTC
[ENA]
¢þ
>WENV182815037
OJYO01000443
[OJYO] human gut metagenome; human gut
8571
8645
+
Asp
GTC
[ENA]
¢þ
>WENV182842583
OKIF01000106
[OKIF] human gut metagenome; human gut
237
311
+
Asp
GTC
[ENA]
¢þ
>WENV182842620
OKIF01000154
[OKIF] human gut metagenome; human gut
27732
27806
+
Asp
GTC
[ENA]
¢þ
>WENV182857409
OKNX01000301
[OKNX] human gut metagenome; human gut
237
311
+
Asp
GTC
[ENA]
¢þ
>WENV182857446
OKNX01000667
[OKNX] human gut metagenome; human gut
6025
6099
+
Asp
GTC
[ENA]
¢þ
>WENV183749474
PPFU01174280
[PPFU] hypolithon metagenome; Antarctic Hypolithon
1169
1095
-
Asp
GTC
[ENA]
¢þ
>WENV170010429
APMI01016982
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1428
1502
+
Asp
GTC
[ENA]
¢þ
>WENV170011295
APMI01054636
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1581
1507
-
Asp
GTC
[ENA]
¢þ
>WENV170011298
APMI01054637
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1528
1454
-
Asp
GTC
[ENA]
¢þ
>WENV170551714
CXWJ01018886
[CXWJ] wastewater metagenome; activated sludge
7208
7134
-
Asp
GTC
[ENA]
¢þ
>WENV170572426
FLOH01000850
[FLOH] marine metagenome; water
12259
12333
+
Asp
GTC
[ENA]
¢þ
>WENV170627414
FUWD013232749
[FUWD] metagenome; unknown
64753
64679
-
Asp
GTC
[ENA]
¢þ
>C181196290
CP031145
Actinomycetota
Intrasporangium calvum C5 [CP031145]
3151427
3151502
+
Asp
GTC
-
¡û
>C181200522
CP031447
Actinomycetota
Austwickia chelonae LK16-18 [CP031447]
2593487
2593561
+
Asp
GTC
-
¡û
>C181225150
LT906453
Actinomycetota
Dermatophilus congolensis NCTC13039 [LT906453]
2531751
2531827
+
Asp
GTC
-
¡û
>W141564783
JIBA01000012
Actinomycetota
Intrasporangiaceae bacterium URHB0013 [JIBA]
632435
632359
-
Asp
GTC
[ENA]
¡û
>W141750816
JNSE01000030
Actinomycetota
actinobacterium acAMD-2 [JNSE]
2552
2628
+
Asp
GTC
[ENA]
¡û
>W141773541
JOIN01000005
Actinomycetota
Corynebacterium variabile [JOIN]
346638
346564
-
Asp
GTC
[ENA]
¡û
>W1910237228
FPKP01000003
Actinomycetota
Actinomyces urinae FC2 Marseille-P2225 [FPKP]
1002994
1003070
+
Asp
GTC
[ENA]
¡û
>W1910237229
FPKP01000003
Actinomycetota
Actinomyces urinae FC2 Marseille-P2225 [FPKP]
1003252
1003326
+
Asp
GTC
[ENA]
¡û
>W1911597368
PNHW01000004
Actinomycetota
Gleimia europaea UMB0652 [PNHW]
61592
61516
-
Asp
GTC
[ENA]
¡û
>W1911597369
PNHW01000004
Actinomycetota
Gleimia europaea UMB0652 [PNHW]
61336
61262
-
Asp
GTC
[ENA]
¡û
>C151077146
CP011112
Actinomycetota
Luteipulveratus mongoliensis MN07-A0370 [CP011112]
1408455
1408379
-
Asp
GTC
-
¡û
>C151090441
CP012070
Actinomycetota
Arsenicicoccus sp. oral taxon 190 F0371 [CP012070]
354116
354192
+
Asp
GTC
-
¡û
>SRA1047063
SRR035093.446309
454 Sequencing (SRP001814)
382
456
+
Asp
GTC
[SRA]
>W1510071702
CDGT01000021
Actinomycetota
Mobilicoccus massiliensis SIT2 [CDGT]
220376
220300
-
Asp
GTC
[ENA]
¡û
>C11111426
CP002343
Actinomycetota
Intrasporangium calvum DSM 43043 [CP002343]
3375828
3375904
+
Asp
GTC
[Ensembl]
¡û
>W1511350930
JRMU01000004
Actinomycetota
Actinomyces sp. S4-C9 [JRMU]
125107
125181
+
Asp
GTC
[ENA]
¡û
>W1511534739
JYOE01000014
Actinomycetota
Terrabacter sp. 28 [JYOE]
215595
215669
+
Asp
GTC
[ENA]
¡û
>W1511568109
LAIR01000002
Actinomycetota
Luteipulveratus halotolerans C296001 [LAIR]
3150081
3150157
+
Asp
GTC
[ENA]
¡û
>W11155914
AFAQ01000438
Actinomycetota
Rhodococcus sp. R04 [AFAQ]
712
788
+
Asp
GTC
[ENA]
¡û
>W1610062561
BCNQ01000003
Actinomycetota
Piscicoccus intestinalis NBRC 104926 [BCNQ]
69409
69483
+
Asp
GTC
[ENA]
¡û
>W121124412
BAFE01000022
Actinomycetota
Mobilicoccus pelagius NBRC 104925 [BAFE]
7303
7229
-
Asp
GTC
[ENA]
¡û
>W121126448
BAGZ01000008
Actinomycetota
Austwickia chelonae NBRC 105200 [BAGZ]
18073
17999
-
Asp
GTC
[ENA]
¡û
>W121126638
BAHD01000028
Actinomycetota
Kineosphaera limosa NBRC 100340 [BAHD]
39816
39742
-
Asp
GTC
[ENA]
¡û
>W1610722290
LMCM01000007
Actinomycetota
Phycicoccus sp. Root101 [LMCM]
32959
33033
+
Asp
GTC
[ENA]
¡û
>W1610727542
LMGM01000001
Actinomycetota
Phycicoccus sp. Root563 [LMGM]
2739028
2738954
-
Asp
GTC
[ENA]
¡û
>W1610729165
LMHU01000001
Actinomycetota
Terrabacter sp. Root181 [LMHU]
932224
932148
-
Asp
GTC
[ENA]
¡û
>W1610730491
LMIW01000001
Actinomycetota
Terrabacter sp. Root85 [LMIW]
478594
478670
+
Asp
GTC
[ENA]
¡û
>W1610742427
LMSC01000008
Actinomycetota
Phycicoccus sp. Soil748 [LMSC]
238276
238202
-
Asp
GTC
[ENA]
¡û
>W1610743326
LMSS01000003
Actinomycetota
Phycicoccus sp. Soil802 [LMSS]
225147
225071
-
Asp
GTC
[ENA]
¡û
>W1610743393
LMST01000001
Actinomycetota
Phycicoccus sp. Soil803 [LMST]
521790
521714
-
Asp
GTC
[ENA]
¡û
>W1610743517
LMSW01000011
Actinomycetota
Terrabacter sp. Soil810 [LMSW]
22713
22637
-
Asp
GTC
[ENA]
¡û
>W1610743531
LMSX01000001
Actinomycetota
Terrabacter sp. Soil811 [LMSX]
937918
937994
+
Asp
GTC
[ENA]
¡û
>W1710060037
BCNQ01000003
Actinomycetota
Piscicoccus intestinalis NBRC 104926 [BCNQ]
69409
69483
+
Asp
GTC
[ENA]
¡û
>W1710555164
FOJD01000001
Actinomycetota
Austwickia chelonae [FOJD]
304810
304736
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK