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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.292368 (23 seq.)
>W1711005297
LQNM01000011
Bacillota
Pediococcus pentosaceus [LQNM]
132
206
+
Val
TAC
[ENA]
¡û
>W1711068953
LSFE01000047
Bacillota
Pediococcus pentosaceus [LSFE]
1099
1025
-
Val
TAC
[ENA]
¡û
>C171119473
CP021474
Bacillota
Pediococcus pentosaceus SRCM100892 [CP021474]
1153999
1153925
-
Val
TAC
-
¡û
>C171126491
CP021927
Bacillota
Pediococcus pentosaceus SRCM100194 [CP021927]
1116548
1116474
-
Val
TAC
-
¡û
>C017406
CP000422
Bacillota
Pediococcus pentosaceus ATCC 25745 [CP000422]
676774
676846
+
Val
TAC
[Ensembl]
¡û
>WENV180334756
OBLF01047735
[OBLF] metagenome; feces
731
657
-
Val
TAC
[ENA]
¢þ
>WENV180432705
OBWI01040843
[OBWI] human gut metagenome; faeces
31
105
+
Val
TAC
[ENA]
¢þ
>W141241970
CAHU01000008
Bacillota
Pediococcus pentosaceus IE-3 [CAHU]
5
79
+
Val
TAC
[ENA]
¡û
>WENV170659249
JXWR01002501
[JXWR] soil metagenome; rice field; ambient CO2
41004
40930
-
Val
TAC
[ENA]
¢þ
>W09101480
AAEV01000038
Bacillota
Pediococcus pentosaceus ATCC 25745 [AAEV]
4563
4489
-
Val
TAC
[ENA]
¡û
>C181042767
CP020018
Bacillota
Pediococcus pentosaceus KCCM 40703 [CP020018]
1691802
1691876
+
Val
TAC
-
¡û
>C191023217
CP023008
Bacillota
Pediococcus pentosaceus SS1-3 [CP023008]
638528
638602
+
Val
TAC
-
¡û
>C141009477
CP006854
Bacillota
Pediococcus pentosaceus SL4 [CP006854]
687437
687511
+
Val
TAC
[Ensembl]
¡û
>W1911631261
PUFB01000007
Bacillota
Pediococcus pentosaceus ATCC 33316 [PUFB]
331418
331344
-
Val
TAC
[ENA]
¡û
>W1810000848
BEWQ01000027
Bacillota
Pediococcus pentosaceus NBRC 3182 [BEWQ]
1001
927
-
Val
TAC
[ENA]
¡û
>C161092339
CP015918
Bacillota
Pediococcus pentosaceus wikim20 [CP015918]
1322432
1322358
-
Val
TAC
[Ensembl]
¡û
>W1610057765
BBZC01000014
Bacillota
Pediococcus pentosaceus [BBZC]
485
559
+
Val
TAC
[ENA]
¡û
>W1610528374
JQBF01000002
Bacillota
Pediococcus pentosaceus [JQBF]
36
110
+
Val
TAC
[ENA]
¡û
>W1610650067
LJIU01000003
Bacillota
Pediococcus pentosaceus wikim20 [LJIU]
5
79
+
Val
TAC
[ENA]
¡û
>W1610855947
LQNM01000011
Bacillota
Pediococcus pentosaceus [LQNM]
132
206
+
Val
TAC
[ENA]
¡û
>W1610909523
LSFE01000047
Bacillota
Pediococcus pentosaceus [LSFE]
1099
1025
-
Val
TAC
[ENA]
¡û
>W1710054464
BBZC01000014
Bacillota
Pediococcus pentosaceus [BBZC]
485
559
+
Val
TAC
[ENA]
¡û
>W1710629964
JQBF01000002
Bacillota
Pediococcus pentosaceus [JQBF]
36
110
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK