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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.292893 (13 seq.)
>WENV182651795
OJMH01004119
[OJMH] human gut metagenome; feces
9527
9452
-
Gly
GCC
[ENA]
¡û
>WENV170405835
CEUG01203880
[CEUG] marine metagenome genome assembly TARA_128_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
180
105
-
Gly
GCC
[ENA]
¡û
>WENV170903177
MDTD01197656
[MDTD] marine metagenome; seawater
174
99
-
Gly
GCC
[ENA]
¡û
>WENV170903178
MDTD01197656
[MDTD] marine metagenome; seawater
79
4
-
Gly
GCC
[ENA]
¡û
>W2010370829
CAHJXL010000001
Lentisphaerota
Victivallis sp. Marseille-Q1083 [CAHJXL]
806529
806454
-
Gly
GCC
[ENA]
¡û
>W2010370830
CAHJXL010000001
Lentisphaerota
Victivallis sp. Marseille-Q1083 [CAHJXL]
806434
806359
-
Gly
GCC
[ENA]
¡û
>W2010370831
CAHJXL010000001
Lentisphaerota
Victivallis sp. Marseille-Q1083 [CAHJXL]
806338
806263
-
Gly
GCC
[ENA]
¡û
>C211283336
CP071032
Lentisphaerota
Lentisphaerae bacterium zth2 [CP071032]
1998547
1998622
+
Gly
GCC
-
¡û
>C211283337
CP071032
Lentisphaerota
Lentisphaerae bacterium zth2 [CP071032]
1998652
1998727
+
Gly
GCC
-
¡û
>C211283338
CP071032
Lentisphaerota
Lentisphaerae bacterium zth2 [CP071032]
1998752
1998827
+
Gly
GCC
-
¡û
>C231625594
CP119760
Lentisphaerota
Lentisphaerota bacterium ZTH [CP119760]
85586
85511
-
Gly
GCC
-
¡û
>C231625595
CP119760
Lentisphaerota
Lentisphaerota bacterium ZTH [CP119760]
85481
85406
-
Gly
GCC
-
¡û
>C231625596
CP119760
Lentisphaerota
Lentisphaerota bacterium ZTH [CP119760]
85381
85306
-
Gly
GCC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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