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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.293553 (66 seq.)
>W1710860486
LMCX01000001
Actinomycetota
Yonghaparkia sp. Root332 [LMCX]
1497456
1497531
+
Ala
GGC
[ENA]
¡û
>W1710881118
LMSV01000001
Actinomycetota
Yonghaparkia sp. Soil809 [LMSV]
102904
102829
-
Ala
GGC
[ENA]
¡û
>W1711270777
LZEM01000021
Actinomycetota
Microbacterium arborescens [LZEM]
321602
321527
-
Ala
GGC
[ENA]
¡û
>W1711385595
MEEJ01000008
Actinomycetota
Microbacterium sp. SCN 70-200 [MEEJ]
117196
117269
+
Ala
GGC
[ENA]
¡û
>W131226594
AUEM01000002
Actinomycetota
Microbacterium sp. URHA0036 [AUEM]
202009
201936
-
Ala
GGC
[ENA]
¡û
>W1711463319
MJIR01000055
Actinomycetota
Microbacterium sp. AR7-10 [MJIR]
11125
11050
-
Ala
GGC
[ENA]
¡û
>W1711463343
MJIR01000103
Actinomycetota
Microbacterium sp. AR7-10 [MJIR]
4673
4600
-
Ala
GGC
[ENA]
¡û
>W1711503472
MKTQ01000014
Actinomycetota
Microbacterium sp. 70-16 [MKTQ]
499956
499883
-
Ala
GGC
[ENA]
¡û
>WENV180209629
OBAL01008658
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
544
470
-
Ala
GGC
[ENA]
¢þ
>WENV180370326
OBOH01072562
[OBOH] marine metagenome; ENVO:00002010
169
96
-
Ala
GGC
[ENA]
¢þ
>WENV180389753
OBPJ01116423
[OBPJ] marine metagenome; seawater
187
260
+
Ala
GGC
[ENA]
¢þ
>WENV180395869
OBPT01217863
[OBPT] marine metagenome; ENVO:00002010 seawater
1
76
+
Ala
GGC
[ENA]
¢þ
>WENV180585225
OCOK01045553
[OCOK] marine metagenome; ENVO:00002010
240
314
+
Ala
GGC
[ENA]
¢þ
>WENV181122525
OEFM01033915
[OEFM] marine metagenome; ENVO:00000569 for seawater
175
102
-
Val
GAC
[ENA]
¢þ
>WENV181126145
OEFV01009581
[OEFV] marine metagenome; Particulate matter on a 0.22 Um pore size filter
782
709
-
Ala
GGC
[ENA]
¢þ
>WENV181393046
OFRX01036573
[OFRX] seawater metagenome; seawater
463
536
+
Ala
GGC
[ENA]
¢þ
>W141187517
AYME01000010
Actinomycetota
Microbacterium paraoxydans DH1b [AYME]
34655
34730
+
Ala
GGC
[ENA]
¡û
>WENV182540313
OJAH01001054
[OJAH] seawater metagenome; Sea water
50
123
+
Ala
GGC
[ENA]
¢þ
>WENV182540390
OJAJ01000138
[OJAJ] seawater metagenome; Sea water
2445
2518
+
Ala
GGC
[ENA]
¢þ
>WENV182540856
OJAQ01000094
[OJAQ] seawater metagenome; Sea water
958
1031
+
Ala
GGC
[ENA]
¢þ
>WENV183054999
OLGW01000432
[OLGW] seawater metagenome; Sea water
1667
1740
+
Ala
GGC
[ENA]
¢þ
>WENV183619209
OOFP01053296
[OOFP] marine metagenome; seawater
208
282
+
Ala
GGC
[ENA]
¢þ
>WENV183619451
OOFQ01007394
[OOFQ] marine metagenome; seawater
884
958
+
Ala
GGC
[ENA]
¢þ
>WENV183629418
OOGP01037402
[OOGP] marine metagenome; seawater
463
536
+
Ala
GGC
[ENA]
¢þ
>WENV183735233
PJUA01004783
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
869
943
+
Ala
GGC
[ENA]
¢þ
>WENV170002498
AGTN01050493
[AGTN] bioreactor metagenome; poplar biomass
186
261
+
Ala
GGC
[ENA]
¢þ
>WENV170002998
AGTN01188876
[AGTN] bioreactor metagenome; poplar biomass
311
236
-
Ala
GGC
[ENA]
¢þ
>WENV170223019
CEQD01094131
[CEQD] marine metagenome genome assembly TARA_042_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
492
568
+
Ala
GGC
[ENA]
¢þ
>WENV170585231
FUFK010272132
[FUFK] metagenome; unknown
412
487
+
Ala
GGC
[ENA]
¢þ
>WENV170619959
FUWD013023620
[FUWD] metagenome; unknown
694
619
-
Ala
GGC
[ENA]
¢þ
>WENV170628090
FUWD013241672
[FUWD] metagenome; unknown
694
619
-
Ala
GGC
[ENA]
¢þ
>WENV170919842
MDTF01012753
[MDTF] marine metagenome; seawater
139
66
-
Ala
GGC
[ENA]
¢þ
>W141484294
JFYO01000001
Actinomycetota
Microbacterium oleivorans [JFYO]
219494
219569
+
Ala
GGC
[ENA]
¡û
>C181115707
CP025299
Actinomycetota
Microbacterium hominis SJTG1 [CP025299]
2061444
2061519
+
Ala
GGC
-
¡û
>C191056033
CP027929
Actinomycetota
Microbacterium sp. SGAir0570 [CP027929]
1712082
1712156
+
Ala
GGC
-
¡û
>C191074626
CP031338
Actinomycetota
Microbacterium oxydans VIU2A [CP031338]
1635482
1635409
-
Ala
GGC
-
¡û
>C191074869
CP031422
Actinomycetota
Microbacterium oxydans HG3 [CP031422]
1650644
1650571
-
Ala
GGC
-
¡û
>W141739330
JNNT01000029
Actinomycetota
Microbacterium sp. SUBG005 [JNNT]
48541
48616
+
Ala
GGC
[ENA]
¡û
>W1910373884
FUHU01000038
Actinomycetota
Agrococcus casei LMG 22410 [FUHU]
93268
93195
-
Ala
GGC
[ENA]
¡û
>W1910636825
LPVV01000038
Actinomycetota
Microbacterium sp. SZ1 [LPVV]
236539
236614
+
Ala
GGC
[ENA]
¡û
>W1911075324
NMUN01000004
Actinomycetota
Microbacterium sp. BR1 [NMUN]
775222
775148
-
Ala
GGC
[ENA]
¡û
>W1911566701
PCPA01000004
Actinomycetota
Microbacterium sp. MYb54 [PCPA]
173362
173289
-
Ala
GGC
[ENA]
¡û
>W1911566827
PCPD01000003
Actinomycetota
Microbacterium sp. MYb50 [PCPD]
112339
112412
+
Ala
GGC
[ENA]
¡û
>W1911566988
PCPG01000001
Actinomycetota
Microbacterium sp. MYb45 [PCPG]
1046711
1046784
+
Ala
GGC
[ENA]
¡û
>W1911567108
PCPI01000002
Actinomycetota
Microbacterium sp. MYb43 [PCPI]
173360
173287
-
Ala
GGC
[ENA]
¡û
>W1911567152
PCPJ01000001
Actinomycetota
Microbacterium sp. MYb40 [PCPJ]
173350
173277
-
Ala
GGC
[ENA]
¡û
>W1911567238
PCPL01000002
Actinomycetota
Microbacterium sp. MYb32 [PCPL]
157570
157643
+
Ala
GGC
[ENA]
¡û
>W1911567512
PCPQ01000002
Actinomycetota
Microbacterium sp. MYb24 [PCPQ]
157619
157692
+
Ala
GGC
[ENA]
¡û
>W1810538344
QDFT01000011
Actinomycetota
Microbacterium testaceum TPD7010 [QDFT]
74360
74286
-
Ala
GGC
[ENA]
¡û
>SRA1032519
SRR035088.36465
454 Sequencing (SRP001809)
102
177
+
Ala
GGC
[SRA]
>SRA1045524
SRR035093.111698
454 Sequencing (SRP001814)
84
9
-
Ala
GGC
[SRA]
>SRA1045611
SRR035093.133471
454 Sequencing (SRP001814)
293
368
+
Ala
GGC
[SRA]
>SRA1045900
SRR035093.193363
454 Sequencing (SRP001814)
81
6
-
Ala
GGC
[SRA]
>SRA1046353
SRR035093.286248
454 Sequencing (SRP001814)
267
192
-
Ala
GGC
[SRA]
>SRA1054861
SRR035099.236881
454 Sequencing (SRP001820)
83
156
+
Ala
GGC
[SRA]
>W1511313249
JPSY01000003
Actinomycetota
Microbacterium profundi Shh49 [JPSY]
403709
403782
+
Ala
GGC
[ENA]
¡û
>C161090879
CP015810
Actinomycetota
Microbacterium chocolatum SIT 101 [CP015810]
2314124
2314049
-
Ala
GGC
-
¡û
>C161090880
CP015810
Actinomycetota
Microbacterium chocolatum SIT 101 [CP015810]
2298629
2298554
-
Ala
GGC
-
¡û
>W1610068317
BCRF01000090
Actinomycetota
Microbacterium hydrocarbonoxydans NBRC 103074 [BCRF]
1060
1135
+
Ala
GGC
[ENA]
¡û
>W1610068360
BCRG01000014
Actinomycetota
Microbacterium oleivorans NBRC 103075 [BCRG]
96710
96785
+
Ala
GGC
[ENA]
¡û
>W1610590717
LDRQ01000013
Actinomycetota
Microbacterium oxydans [LDRQ]
56583
56656
+
Ala
GGC
[ENA]
¡û
>W1610722832
LMCX01000001
Actinomycetota
Yonghaparkia sp. Root332 [LMCX]
1497456
1497531
+
Ala
GGC
[ENA]
¡û
>W1610738870
LMPH01000003
Actinomycetota
Microbacterium sp. Leaf179 [LMPH]
361487
361412
-
Ala
GGC
[ENA]
¡û
>W1610743464
LMSV01000001
Actinomycetota
Yonghaparkia sp. Soil809 [LMSV]
102904
102829
-
Ala
GGC
[ENA]
¡û
>W1611030341
LZEM01000021
Actinomycetota
Microbacterium arborescens [LZEM]
321602
321527
-
Ala
GGC
[ENA]
¡û
>W1710065733
BCRG01000014
Actinomycetota
Microbacterium oleivorans NBRC 103075 [BCRG]
96710
96785
+
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK