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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.293796 (84 seq.)
>W1711049021
LRQF02000047
Bacteroidota
Prevotella bivia [LRQF]
47179
47254
+
Pro
CGG
[ENA]
¡û
>W1711090015
LTAG01000005
Bacteroidota
Prevotella bivia [LTAG]
46692
46767
+
Pro
CGG
[ENA]
¡û
>W131217071
ATWK01000012
Bacteroidota
Prevotella denticola DSM 20614 [ATWK]
78006
78081
+
Pro
CGG
[ENA]
¡û
>WENV180007715
FLSA01216640
[FLSA] metagenome; saliva
261
188
-
Pro
CGG
[ENA]
¡û
>WENV180118468
OASD01000005
[OASD] human gut metagenome; ENVO:feces
57438
57511
+
Pro
CGG
[ENA]
¡û
>WENV180347614
OBLO01000743
[OBLO] metagenome; feces
20615
20542
-
Pro
CGG
[ENA]
¡û
>WENV180349413
OBLO01042470
[OBLO] metagenome; feces
602
529
-
Pro
CGG
[ENA]
¡û
>WENV180403865
OBRT01033963
[OBRT] human gut metagenome; ENVO:feces
277
350
+
Pro
CGG
[ENA]
¡û
>WENV180404706
OBSA01033331
[OBSA] human gut metagenome; ENVO:feces
143
216
+
Pro
CGG
[ENA]
¡û
>WENV180533658
OCHM01000024
[OCHM] human gut metagenome; human gut
106766
106693
-
Pro
CGG
[ENA]
¡û
>WENV180655917
OCVV010496022
[OCVV] gut metagenome; gut
233
306
+
Pro
CGG
[ENA]
¡û
>WENV180655918
OCVV010496022
[OCVV] gut metagenome; gut
233
306
+
Pro
CGG
[ENA]
¡û
>WENV180721146
ODGK01012104
[ODGK] human metagenome; G_DNA_Palatine Tonsils
299
372
+
Pro
CGG
[ENA]
¡û
>WENV180722316
ODGM01000083
[ODGM] human metagenome; G_DNA_Palatine Tonsils
1571
1644
+
Pro
CGG
[ENA]
¡û
>WENV180724791
ODGR01002772
[ODGR] human metagenome; G_DNA_Tongue dorsum
5925
5852
-
Pro
CGG
[ENA]
¡û
>WENV180724932
ODGR01005432
[ODGR] human metagenome; G_DNA_Tongue dorsum
1791
1718
-
Pro
CGG
[ENA]
¡û
>WENV180768294
ODIG01004668
[ODIG] human metagenome; G_DNA_Tongue dorsum
4970
5043
+
Pro
CGG
[ENA]
¡û
>WENV180769267
ODIG01050981
[ODIG] human metagenome; G_DNA_Tongue dorsum
358
285
-
Pro
CGG
[ENA]
¡û
>WENV180787819
ODIS01017350
[ODIS] human metagenome; G_DNA_Supragingival plaque
1335
1262
-
Pro
CGG
[ENA]
¡û
>WENV180792359
ODIW01000299
[ODIW] human metagenome; G_DNA_Tongue dorsum
37455
37528
+
Pro
CGG
[ENA]
¡û
>WENV180792405
ODIW01000392
[ODIW] human metagenome; G_DNA_Tongue dorsum
22378
22305
-
Pro
CGG
[ENA]
¡û
>WENV180801944
ODJE01000031
[ODJE] human metagenome; G_DNA_Tongue dorsum
45416
45343
-
Pro
CGG
[ENA]
¡û
>WENV180802013
ODJE01000078
[ODJE] human metagenome; G_DNA_Tongue dorsum
53081
53154
+
Pro
CGG
[ENA]
¡û
>WENV180815456
ODJP01000460
[ODJP] human metagenome; G_DNA_Tongue dorsum
7938
7865
-
Pro
CGG
[ENA]
¡û
>WENV180819804
ODJR01000546
[ODJR] human metagenome; G_DNA_Tongue dorsum
4509
4582
+
Pro
CGG
[ENA]
¡û
>WENV180823419
ODJW01029419
[ODJW] human metagenome; G_DNA_Supragingival plaque
11
84
+
Pro
CGG
[ENA]
¡û
>WENV180874682
ODLQ01003337
[ODLQ] human metagenome; G_DNA_Tongue dorsum
3095
3168
+
Pro
CGG
[ENA]
¡û
>WENV180916436
ODTD01000030
[ODTD] human metagenome; G_DNA_Tongue dorsum
85063
85136
+
Pro
CGG
[ENA]
¡û
>WENV180919724
ODTH01000079
[ODTH] human metagenome; G_DNA_Tongue dorsum
24902
24975
+
Pro
CGG
[ENA]
¡û
>WENV180967114
ODUT01000007
[ODUT] human metagenome; G_DNA_Tongue dorsum
84996
85069
+
Pro
CGG
[ENA]
¡û
>WENV180967616
ODUT01001669
[ODUT] human metagenome; G_DNA_Tongue dorsum
9578
9651
+
Pro
CGG
[ENA]
¡û
>WENV180974863
ODUY01000103
[ODUY] human metagenome; G_DNA_Supragingival plaque
9077
9150
+
Pro
CGG
[ENA]
¡û
>WENV180985220
ODVJ01001373
[ODVJ] human metagenome; G_DNA_Tongue dorsum
9279
9352
+
Pro
CGG
[ENA]
¡û
>WENV180989938
ODVN01000193
[ODVN] human metagenome; G_DNA_Tongue dorsum
22014
22087
+
Pro
CGG
[ENA]
¡û
>WENV181003486
ODVX01014440
[ODVX] human metagenome; G_DNA_Supragingival plaque
875
802
-
Pro
CGG
[ENA]
¡û
>WENV181013197
ODWN01000085
[ODWN] human metagenome; G_DNA_Tongue dorsum
38550
38623
+
Pro
CGG
[ENA]
¡û
>WENV181013331
ODWN01000350
[ODWN] human metagenome; G_DNA_Tongue dorsum
25373
25446
+
Pro
CGG
[ENA]
¡û
>WENV181015996
ODWR01000069
[ODWR] human metagenome; G_DNA_Tongue dorsum
31310
31237
-
Pro
CGG
[ENA]
¡û
>WENV181016160
ODWR01000274
[ODWR] human metagenome; G_DNA_Tongue dorsum
21935
22008
+
Pro
CGG
[ENA]
¡û
>WENV181032504
ODXN01000095
[ODXN] human metagenome; G_DNA_Tongue dorsum
44566
44493
-
Pro
CGG
[ENA]
¡û
>WENV181040462
ODXS01000023
[ODXS] human metagenome; G_DNA_Tongue dorsum
62160
62233
+
Pro
CGG
[ENA]
¡û
>WENV181059229
ODYM01000128
[ODYM] human metagenome; G_DNA_Tongue dorsum
28096
28169
+
Pro
CGG
[ENA]
¡û
>WENV181062669
ODYO01002803
[ODYO] human metagenome; G_DNA_Palatine Tonsils
397
470
+
Pro
CGG
[ENA]
¡û
>WENV181086682
OEAY01001998
[OEAY] human metagenome; G_DNA_Tongue dorsum
8844
8917
+
Pro
CGG
[ENA]
¡û
>WENV181094573
OEBY01000380
[OEBY] human metagenome; G_DNA_Tongue dorsum
32213
32286
+
Pro
CGG
[ENA]
¡û
>WENV181094574
OEBY01000383
[OEBY] human metagenome; G_DNA_Tongue dorsum
13323
13250
-
Pro
CGG
[ENA]
¡û
>WENV181096861
OECA01000584
[OECA] human metagenome; G_DNA_Tongue dorsum
1189
1116
-
Pro
CGG
[ENA]
¡û
>WENV181139316
OEGN01005828
[OEGN] human metagenome; G_DNA_Tongue dorsum
3
76
+
Pro
CGG
[ENA]
¡û
>WENV181159809
OEIK01000209
[OEIK] human metagenome; G_DNA_Supragingival plaque
9866
9939
+
Pro
CGG
[ENA]
¡û
>W141145818
AWUZ01000023
Bacteroidota
Prevotella sp. F0091 [AWUZ]
18133
18060
-
Pro
CGG
[ENA]
¡û
>WENV181567830
OGJK01000016
[OGJK] metagenome; Human gut stool
163385
163460
+
Pro
CGG
[ENA]
¡û
>WENV181574629
OGJT01001692
[OGJT] metagenome; Human gut stool
1276
1349
+
Pro
CGG
[ENA]
¡û
>WENV181762604
OGQX01000304
[OGQX] human gut metagenome; faeces
38396
38321
-
Pro
CGG
[ENA]
¡û
>W141226865
BAKO01000004
Bacteroidota
Prevotella fusca JCM 17724 [BAKO]
131509
131582
+
Pro
CGG
[ENA]
¡û
>WENV183348234
OLWU01011371
[OLWU] human gut metagenome; feces
894
967
+
Pro
CGG
[ENA]
¡û
>WENV183364443
OLXM01033935
[OLXM] human gut metagenome; feces
851
778
-
Pro
CGG
[ENA]
¡û
>WENV183477607
OMFC01005604
[OMFC] human gut metagenome; feces
2947
2874
-
Pro
CGG
[ENA]
¡û
>WENV170775333
LXOW01033119
[LXOW] bovine gut metagenome; Cow rumen
798
873
+
Pro
CGG
[ENA]
¡û
>C181091397
CP023863
Bacteroidota
Prevotella jejuni CD3:33 [CP023863, CP023864]
1800398
1800325
-
Pro
CGG
-
¡û
>W2110073013
BPTS01000001
Bacteroidota
Prevotella multisaccharivorax JCM 12954 [BPTS]
254066
254139
+
Pro
CGG
[ENA]
¡û
>W2110659595
JAHXCB010000010
Bacteroidota
Prevotella melaninogenica SCHI0034.S.9 [JAHXCB]
45922
45849
-
Pro
CGG
[ENA]
¡û
>W2110660016
JAHXCL010000010
Bacteroidota
Prevotella denticola SCHI0027.S.12 [JAHXCL]
37499
37426
-
Pro
CGG
[ENA]
¡û
>W2110660054
JAHXCM010000002
Bacteroidota
Prevotella melaninogenica SCHI0027.S.11 [JAHXCM]
140712
140785
+
Pro
CGG
[ENA]
¡û
>W2110660091
JAHXCN010000001
Bacteroidota
Prevotella melaninogenica SCHI0027.S.9 [JAHXCN]
53395
53322
-
Pro
CGG
[ENA]
¡û
>W2110660183
JAHXCP010000004
Bacteroidota
Prevotella melaninogenica SCHI0027.S.6 [JAHXCP]
26102
26029
-
Pro
CGG
[ENA]
¡û
>W2110660318
JAHXCS010000015
Bacteroidota
Prevotella jejuni SCHI0011.S.13 [JAHXCS]
39856
39929
+
Pro
CGG
[ENA]
¡û
>W2110661018
JAHXRA010000003
Bacteroidota
Prevotella melaninogenica SCHI0043.S.1 [JAHXRA]
152893
152966
+
Pro
CGG
[ENA]
¡û
>W2110661129
JAHXRC010000016
Bacteroidota
Prevotella denticola SCHI0042.S.4 [JAHXRC]
36282
36355
+
Pro
CGG
[ENA]
¡û
>C211306389
CP072343
Bacteroidota
Prevotella melaninogenica F0695 [CP072343, CP072344]
1527795
1527722
-
Pro
CGG
-
¡û
>C211306445
CP072345
Bacteroidota
Prevotella melaninogenica F0692 [CP072345, CP072346]
155101
155028
-
Pro
CGG
-
¡û
>C211306507
CP072349
Bacteroidota
Prevotella melaninogenica F0301 [CP072349, CP072350]
406421
406494
+
Pro
CGG
-
¡û
>C211306739
CP072361
Bacteroidota
Prevotella melaninogenica F0054 [CP072361, CP072362]
466503
466576
+
Pro
CGG
-
¡û
>C211306789
CP072363
Bacteroidota
Prevotella jejuni F0697 [CP072363, CP072364]
1470780
1470853
+
Pro
CGG
-
¡û
>C211306984
CP072371
Bacteroidota
Prevotella denticola F0288 [CP072371, CP072372]
1564223
1564296
+
Pro
CGG
-
¡û
>C241270230
CP126676
Bacteroidota
Prevotella bivia PLW0727 [CP126676, CP126677]
880075
880148
+
Pro
CGG
-
¡û
>C10110271
CP002122
Bacteroidota
Prevotella melaninogenica ATCC 25845 [CP002122, CP002123]
1558093
1558020
-
Pro
CGG
[Ensembl]
¡û
>W11113823
ADCT01000095
Bacteroidota
Prevotella sp. C561 [ADCT]
21419
21346
-
Pro
CGG
[ENA]
¡û
>C11116988
CP002589
Bacteroidota
Prevotella denticola F0289 [CP002589]
476169
476244
+
Pro
CGG
[Ensembl]
¡û
>W1511351796
JRNO01000054
Bacteroidota
Prevotella denticola DNF00960 [JRNO]
46654
46729
+
Pro
CGG
[ENA]
¡û
>W1511351874
JRNQ01000025
Bacteroidota
Prevotella bivia DNF00320 [JRNQ]
22223
22148
-
Pro
CGG
[ENA]
¡û
>W11151912
AEXO01000100
Bacteroidota
Prevotella denticola CRIS 18C-A [AEXO]
39048
38973
-
Pro
CGG
[ENA]
¡û
>W121021784
AGWK01000001
Bacteroidota
Prevotella micans F0438 [AGWK]
38085
38160
+
Pro
CGG
[ENA]
¡û
>W1610890150
LRQF02000047
Bacteroidota
Prevotella bivia [LRQF]
47179
47254
+
Pro
CGG
[ENA]
¡û
>W1610924359
LTAG01000005
Bacteroidota
Prevotella bivia [LTAG]
46692
46767
+
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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