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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.294101 (36 seq.)
>W1710856513
LLZK01000269
Actinomycetota
Streptomyces sp. NRRL S-1521 [LLZK]
18667
18594
-
Thr
GGT
[ENA]
¡û
>W1710923892
LOCL01000082
Actinomycetota
Streptomyces silvensis [LOCL]
159709
159634
-
Thr
GGT
[ENA]
¡û
>C171039644
CP015588
Actinomycetota
Streptomyces alfalfae ACCC40021 [CP015588]
2603448
2603375
-
Thr
GGT
-
¡û
>C171122612
CP021748
Actinomycetota
Streptomyces alboflavus MDJK44 [CP021748]
6938878
6938951
+
Thr
GGT
-
¡û
>W131096005
AOPZ01000006
Actinomycetota
Streptomyces aurantiacus JA 4570 [AOPZ]
874
949
+
Thr
GGT
[ENA]
¡û
>WENV183713386
PDWI01136266
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1655
1728
+
Thr
GGT
[ENA]
¢þ
>WENV183716321
PDWI01301005
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
415
342
-
Thr
GGT
[ENA]
¢þ
>WENV170686888
LFRM01168716
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
460
387
-
Thr
GGT
[ENA]
¢þ
>C181071059
CP022685
Actinomycetota
Streptomyces formicae KY5 [CP022685]
6801388
6801461
+
Thr
GGT
-
¡û
>C191072617
CP030771
Actinomycetota
Streptomyces sp. YIM 121038 [CP030771]
6882820
6882895
+
Thr
GGT
-
¡û
>C191087113
CP032266
Actinomycetota
Streptomyces fradiae NKZ-259 [CP032266]
2265568
2265495
-
Thr
GGT
-
¡û
>W141756721
JNXI01000046
Actinomycetota
Streptomyces iakyrus [JNXI]
18381
18306
-
Thr
GGT
[ENA]
¡û
>W141757320
JNXT01000059
Actinomycetota
Streptomyces alboflavus [JNXT]
138323
138250
-
Thr
GGT
[ENA]
¡û
>W141759136
JNZC01000943
Actinomycetota
Actinomadura madurae [JNZC]
888
961
+
Thr
GGT
[ENA]
¡û
>W141761184
JOAO01000248
Actinomycetota
Streptomyces flaveus [JOAO]
907
980
+
Thr
GGT
[ENA]
¡û
>W141761326
JOAQ01000041
Actinomycetota
Streptomyces ruber [JOAQ]
170260
170187
-
Thr
GGT
[ENA]
¡û
>W141761640
JOAW01000207
Actinomycetota
Streptomyces sp. NRRL S-146 [JOAW]
943
1018
+
Thr
GGT
[ENA]
¡û
>W141765209
JODF01000006
Actinomycetota
Streptomyces sp. NRRL S-920 [JODF]
1901
1976
+
Thr
GGT
[ENA]
¡û
>W1910804694
MTHG01000024
Actinomycetota
Streptomyces sp. 46 [MTHG]
3791
3717
-
Thr
GGT
[ENA]
¡û
>W1911083492
NNBL01000001
Actinomycetota
Streptomyces sp. CB01635 [NNBL]
923
996
+
Thr
GGT
[ENA]
¡û
>W1911496971
OCNA01000001
Actinomycetota
Streptomyces sp. Ag82_G6-1 [OCNA]
6339370
6339443
+
Thr
GGT
[ENA]
¡û
>W1911538378
OMOH01000006
Actinomycetota
Propionibacterium ruminifibrarum JV5 [OMOH]
104692
104618
-
Thr
GGT
[ENA]
¡û
>W1911659155
QEXM01000045
Actinomycetota
Streptomyces alfalfae XY25 [QEXM]
357269
357196
-
Thr
GGT
[ENA]
¡û
>W1810189357
PKIZ01000004
Actinomycetota
Kytococcus schroeteri UMB1298 [PKIZ]
59998
60071
+
Thr
GGT
[ENA]
¡û
>W1810224186
POUC01000247
Actinomycetota
Streptomyces cahuitamycinicus 13K301 [POUC]
11075
11000
-
Thr
GGT
[ENA]
¡û
>W1810694291
QLLY01000003
Actinomycetota
Streptomyces sp. PsTaAH-137 [QLLY]
593845
593772
-
Thr
GGT
[ENA]
¡û
>W1810888765
QURC01000004
Actinomycetota
Streptomyces sp. AcE210 [QURC]
3148836
3148763
-
Thr
GGT
[ENA]
¡û
>W1510061419
CCYJ01000020
Actinomycetota
Tessaracoccus massiliensis SIT6 [CCYJ]
995694
995621
-
Thr
GGT
[ENA]
¡û
>C161083038
CP015098
Actinomycetota
Streptomyces qaidamensis S10 [CP015098]
6589960
6590035
+
Thr
GGT
[Ensembl]
¡û
>W1610633170
LIQN01000115
Actinomycetota
Streptomyces alboniger [LIQN]
19069
18994
-
Thr
GGT
[ENA]
¡û
>W1610633539
LIQU01000062
Actinomycetota
Streptomyces kanamyceticus [LIQU]
12991
12916
-
Thr
GGT
[ENA]
¡û
>W1610718894
LLZK01000269
Actinomycetota
Streptomyces sp. NRRL S-1521 [LLZK]
18667
18594
-
Thr
GGT
[ENA]
¡û
>W1610781493
LOCL01000082
Actinomycetota
Streptomyces silvensis [LOCL]
159709
159634
-
Thr
GGT
[ENA]
¡û
>W1710610305
FYEZ01000001
Actinomycetota
Kytococcus aerolatus [FYEZ]
844460
844387
-
Thr
GGT
[ENA]
¡û
>W1710767602
LIQN01000115
Actinomycetota
Streptomyces alboniger [LIQN]
19069
18994
-
Thr
GGT
[ENA]
¡û
>W1710767971
LIQU01000062
Actinomycetota
Streptomyces kanamyceticus [LIQU]
12991
12916
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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