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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.294305 (27 seq.)
>W1711135062
LUYM01000030
Actinomycetota
Actinomycetales bacterium Actino_02 [LUYM]
102255
102179
-
Ile
GAT
[ENA]
¡û
>W1711334178
MBQD01000002
Actinomycetota
Tessaracoccus lapidicaptus [MBQD]
70904
70980
+
Ile
GAT
[ENA]
¡û
>W1711724853
MTQN01000012
Actinomycetota
Kribbella sp. ALI-6-A [MTQN]
1250181
1250105
-
Ile
GAT
[ENA]
¡û
>C171091504
CP019229
Actinomycetota
Tessaracoccus sp. T2.5-30 [CP019229]
1731553
1731477
-
Ile
GAT
-
¡û
>C171096247
CP019606
Actinomycetota
Tessaracoccus aquimaris NSG39 [CP019606]
3196123
3196199
+
Ile
GAT
-
¡û
>C171096312
CP019607
Actinomycetota
Tessaracoccus flavescens SST-39T [CP019607]
1577137
1577061
-
Ile
GAT
-
¡û
>WENV180285734
OBID01661935
[OBID] metagenome; sludge
214
138
-
Ile
GAT
[ENA]
¢þ
>WENV180289413
OBIS01022944
[OBIS] soil metagenome; Alaskan Permafrost
207
282
+
Ile
GAT
[ENA]
¢þ
>WENV181173064
OEIV011173039
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
51
127
+
Ile
GAT
[ENA]
¢þ
>WENV181188108
OEOE01024889
[OEOE] activated sludge metagenome; Activated Sludge
316
240
-
Ile
GAT
[ENA]
¢þ
>WENV181189382
OEOF01033257
[OEOF] activated sludge metagenome; Activated Sludge
380
456
+
Ile
GAT
[ENA]
¢þ
>WENV181311852
OFJB01016352
[OFJB] sludge metagenome; sludge
312
236
-
Ile
GAT
[ENA]
¢þ
>WENV181395510
OFSA01001053
[OFSA] freshwater metagenome; Freshwater Lake
615
691
+
Ile
GAT
[ENA]
¢þ
>WENV183710158
PDWI01040790
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2577
2502
-
Ile
GAT
[ENA]
¢þ
>WENV183718196
PDWJ01002781
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
39850
39925
+
Ile
GAT
[ENA]
¢þ
>WENV170010888
APMI01033442
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
820
894
+
Ile
GAT
[ENA]
¢þ
>WENV170718545
LSQX01080847
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1921
1845
-
Ile
GAT
[ENA]
¢þ
>WENV170784156
MCHG01000051
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
8242
8166
-
Ile
GAT
[ENA]
¢þ
>C181229764
LT985188
Actinomycetota
Micropruina glycogenica [LT985188]
3097156
3097232
+
Ile
GAT
-
¡û
>W09109256
ABUC01000003
Actinomycetota
Kribbella flavida DSM 17836 [ABUC]
337162
337238
+
Ile
GAT
[ENA]
¡û
>W1911709315
QPKK01000145
Actinomycetota
Desertihabitans aurantiacus CPCC 204711 [QPKK]
9208
9133
-
Ile
GAT
[ENA]
¡û
>W1810058005
PDJC01000001
Actinomycetota
Propionicimonas paludicola DSM 15597 [PDJC]
2953160
2953084
-
Ile
GAT
[ENA]
¡û
>W1810744377
QOUI01000003
Actinomycetota
Desertihabitans brevis 16Sb5-5 [QOUI]
274626
274551
-
Ile
GAT
[ENA]
¡û
>C10107942
CP001736
Actinomycetota
Kribbella flavida DSM 17836 [CP001736]
16186
16262
+
Ile
GAT
[Ensembl]
¡û
>W1610946182
LUYM01000030
Actinomycetota
Actinomycetales bacterium Actino_02 [LUYM]
102255
102179
-
Ile
GAT
[ENA]
¡û
>W1611066145
MBQD01000002
Actinomycetota
Tessaracoccus lapidicaptus [MBQD]
70904
70980
+
Ile
GAT
[ENA]
¡û
>W1710588332
FQZG01000032
Actinomycetota
Tessaracoccus bendigoensis DSM 12906 [FQZG]
19761
19837
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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