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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.294483 (8 seq.)
>WENV183661012
ORJL010074614
[ORJL] groundwater metagenome; groundwater
5692
5620
-
Ile2
CAT
[ENA]
¡û
>WENV183675015
ORJL011459869
[ORJL] groundwater metagenome; groundwater
764
692
-
Ile2
CAT
[ENA]
¡û
>WENV183676227
ORJL011601432
[ORJL] groundwater metagenome; groundwater
5
77
+
Ile2
CAT
[ENA]
¡û
>WENV183682436
ORMF010438312
[ORMF] groundwater metagenome; groundwater
74
2
-
Ile2
CAT
[ENA]
¡û
>WENV183682443
ORMF010439038
[ORMF] groundwater metagenome; groundwater
1437
1365
-
Ile2
CAT
[ENA]
¡û
>WENV183682882
ORMF010500308
[ORMF] groundwater metagenome; groundwater
472
544
+
Ile2
CAT
[ENA]
¡û
>WENV183688476
ORMF011295444
[ORMF] groundwater metagenome; groundwater
307
235
-
Ile2
CAT
[ENA]
¡û
>WENV183691197
ORMF011720555
[ORMF] groundwater metagenome; groundwater
12
84
+
Ile2
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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