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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.29451 (24 seq.)
>W131109476
APHV01000303
Alphaproteobacteria
Azospirillum brasilense FP2 [APHV]
86699
86610
-
Ser
CGA
[ENA]
¡û
>W141223612
BADK01001025
Alphaproteobacteria
Azospirillum sp. B506 [BADK]
1244
1333
+
Ser
CGA
[ENA]
¡û
>WENV183734932
PJUA01000175
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
14323
14234
-
Ser
CGA
[ENA]
¢þ
>C181063141
CP022364
Alphaproteobacteria
Azospirillum sp. TSH58 [CP022364]
2185384
2185473
+
Ser
CGA
-
¡û
>C181177435
CP029353
Alphaproteobacteria
Azospirillum thermophilum CFH 70021 [CP029352, CP029353, CP029354, CP029355]
1892873
1892784
-
Ser
CGA
-
¡û
>W141520240
JGVN01000001
Alphaproteobacteria
Azospirillum argentinense brasilense [JGVN]
764119
764208
+
Ser
CGA
[ENA]
¡û
>C191087922
CP032321
Alphaproteobacteria
Azospirillum argentinense MTCC4035 [CP032321]
1472999
1472910
-
Ser
CGA
-
¡û
>C191088041
CP032339
Alphaproteobacteria
Azospirillum brasilense MTCC4038 [CP032339]
1236943
1236854
-
Ser
CGA
-
¡û
>C191088088
CP032345
Alphaproteobacteria
Azospirillum brasilense MTCC4039 [CP032345]
1078798
1078709
-
Ser
CGA
-
¡û
>W1910612917
LGQT01000019
Alphaproteobacteria
Azospirillum sp. TSH7 [LGQT]
60043
59954
-
Ser
CGA
[ENA]
¡û
>W1910613068
LGQV01000104
Alphaproteobacteria
Azospirillum sp. TSH58 [LGQV]
13131
13042
-
Ser
CGA
[ENA]
¡û
>W1910613296
LGQZ01000099
Alphaproteobacteria
Azospirillum sp. TSO22-1 [LGQZ]
30898
30809
-
Ser
CGA
[ENA]
¡û
>W1910613400
LGRK01000032
Alphaproteobacteria
Azospirillum sp. Sp 7 [LGRK]
100894
100983
+
Ser
CGA
[ENA]
¡û
>W1911138072
NOWT01000002
Alphaproteobacteria
Azospirillum brasilense 2A1 [NOWT]
212333
212422
+
Ser
CGA
[ENA]
¡û
>W1911768800
QXHE01000134
Alphaproteobacteria
Azospirillum brasilense SR80 [QXHE]
3442
3353
-
Ser
CGA
[ENA]
¡û
>W1810222232
POQV01000002
Alphaproteobacteria
Azospirillum brasilense Ab-V5 [POQV]
268783
268694
-
Ser
CGA
[ENA]
¡û
>W1810223517
POTD01000002
Alphaproteobacteria
Azospirillum brasilense Ab-V6 [POTD]
268717
268628
-
Ser
CGA
[ENA]
¡û
>W1810226076
POWG01000003
Alphaproteobacteria
Azospirillum argentinense REC3 [POWG]
203432
203343
-
Ser
CGA
[ENA]
¡û
>W1810692561
QLKQ01000008
Alphaproteobacteria
Azospirillum brasilense HAMBI_3172 [QLKQ]
80460
80371
-
Ser
CGA
[ENA]
¡û
>C151034741
CP007793
Alphaproteobacteria
Azospirillum argentinense Az39 [CP007793]
458669
458758
+
Ser
CGA
[Ensembl]
¡û
>C121017695
HE577327
Alphaproteobacteria
Azospirillum baldaniorum Sp245 [HE577327]
864668
864757
+
Ser
CGA
[Ensembl]
¡û
>C161047374
CP012914
Alphaproteobacteria
Azospirillum brasilense Sp 7 [CP012914]
2521626
2521537
-
Ser
CGA
[Ensembl]
¡û
>W1710626678
JPIR01000019
Alphaproteobacteria
Azospirillum brasilense [JPIR]
49504
49415
-
Ser
CGA
[ENA]
¡û
>W1710626770
JPIS01000049
Alphaproteobacteria
Azospirillum brasilense [JPIS]
68456
68545
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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