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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.294908 (13 seq.)
>WENV170684924
LFRM01064216
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
537
609
+
Thr
GGT
[ENA]
¢þ
>WENV170686774
LFRM01163089
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
12933
13005
+
Thr
GGT
[ENA]
¢þ
>WENV170720319
LSQX01148788
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
26790
26718
-
Thr
GGT
[ENA]
¢þ
>C181115590
CP025286
Bacillota
Ethanoligenens harbinense YUAN-3 [CP025286]
886325
886250
-
Thr
GGT
-
¡û
>C191031593
CP025287
Bacillota
Ethanoligenens harbinense B49 [CP025287]
851503
851428
-
Thr
GGT
-
¡û
>C191031648
CP025288
Bacillota
Ethanoligenens harbinense X-29 [CP025288]
886325
886250
-
Thr
GGT
-
¡û
>C191072259
CP030278
Bacillota
Ethanoligenens harbinense W1 [CP030278]
886337
886262
-
Thr
GGT
-
¡û
>W1910504123
FYDE01000005
Bacillota
Marasmitruncus massiliensis Marseille-P3646 [FYDE]
158892
158817
-
Thr
GGT
[ENA]
¡û
>W10115274
ADJQ01000002
Bacillota
Ethanoligenens harbinense YUAN-3 [ADJQ]
74864
74939
+
Thr
GGT
[ENA]
¡û
>C11108786
CP002400
Bacillota
Ethanoligenens harbinense YUAN-3 [CP002400]
886324
886249
-
Thr
GGT
[Ensembl]
¡û
>W11118860
ADJQ01000002
Bacillota
Ethanoligenens harbinense YUAN-3 [ADJQ]
74864
74939
+
Thr
GGT
[ENA]
¡û
>W1610606922
LFTK01000056
Bacillota
Clostridiales bacterium DTU064 [LFTK]
12933
13005
+
Thr
GGT
[ENA]
¡û
>W1710728209
LFTK01000056
Bacillota
Clostridiales bacterium DTU064 [LFTK]
12933
13005
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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