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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.294918 (37 seq.)
>W131002705
AGZC01000013
Bacillota
Facklamia hominis ACS-120-V-Sch10 [AGZC]
7552
7478
-
Phe
GAA
[ENA]
¡û
>W1711096099
LTHL01000055
Bacillota
Facklamia sp. HMSC062C11 [LTHL]
16836
16762
-
Phe
GAA
[ENA]
¡û
>C171094277
CP019433
Bacillota
Jeotgalibaca sp. PTS2502 [CP019433]
495425
495497
+
Phe
GAA
-
¡û
>C171094303
CP019433
Bacillota
Jeotgalibaca sp. PTS2502 [CP019433]
1748685
1748760
+
Phe
GAA
-
¡û
>C171094326
CP019433
Bacillota
Jeotgalibaca sp. PTS2502 [CP019433]
1130741
1130669
-
Phe
GAA
-
¡û
>C171098925
CP019728
Bacillota
Jeotgalibaca dankookensis EX-07 [CP019728]
319230
319305
+
Phe
GAA
-
¡û
>C171098960
CP019728
Bacillota
Jeotgalibaca dankookensis EX-07 [CP019728]
1824587
1824512
-
Phe
GAA
-
¡û
>C171098993
CP019728
Bacillota
Jeotgalibaca dankookensis EX-07 [CP019728]
984101
984029
-
Phe
GAA
-
¡û
>W141007905
AGZE01000006
Bacillota
Falseniella ignava CCUG 37419 [AGZE]
320
395
+
Phe
GAA
[ENA]
¡û
>W08004207
ABHH01000018
Bacillota
Carnobacterium sp. AT7 [ABHH]
46577
46505
-
Phe
GAA
[ENA]
¡û
>W08004255
ABHH01000050
Bacillota
Carnobacterium sp. AT7 [ABHH]
6938
6866
-
Phe
GAA
[ENA]
¡û
>WENV182636466
OJKZ01008508
[OJKZ] metagenome; surface
1402
1327
-
Phe
GAA
[ENA]
¢þ
>WENV182643691
OJLW01000565
[OJLW] metagenome; surface
660
735
+
Phe
GAA
[ENA]
¢þ
>WENV182644842
OJLY01000555
[OJLY] metagenome; surface
729
804
+
Phe
GAA
[ENA]
¢þ
>WENV170685104
LFRM01072973
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
2716
2641
-
Phe
GAA
[ENA]
¢þ
>C191024696
CP023434
Bacillota
Suicoccus acidiformans ZY16052 [CP023434]
236055
236130
+
Phe
GAA
-
¡û
>C191126003
CP034465
Bacillota
Jeotgalibaca ciconiae H21T32 [CP034465]
2209225
2209299
+
Phe
GAA
-
¡û
>C191126024
CP034465
Bacillota
Jeotgalibaca ciconiae H21T32 [CP034465]
2864300
2864228
-
Phe
GAA
-
¡û
>C191126050
CP034465
Bacillota
Jeotgalibaca ciconiae H21T32 [CP034465]
1271512
1271438
-
Phe
GAA
-
¡û
>W141815505
JQIV01000006
Bacillota
Carnobacterium inhibens DSM 13024 [JQIV]
2262935
2263009
+
Phe
GAA
[ENA]
¡û
>W141815515
JQIV01000006
Bacillota
Carnobacterium inhibens DSM 13024 [JQIV]
594606
594531
-
Phe
GAA
[ENA]
¡û
>W141815527
JQIV01000006
Bacillota
Carnobacterium inhibens DSM 13024 [JQIV]
581497
581422
-
Phe
GAA
[ENA]
¡û
>W141818106
JQLG01000004
Bacillota
Carnobacterium alterfunditum DSM 5972 [JQLG]
2462753
2462678
-
Phe
GAA
[ENA]
¡û
>W141818120
JQLG01000004
Bacillota
Carnobacterium alterfunditum DSM 5972 [JQLG]
433
358
-
Phe
GAA
[ENA]
¡û
>W141818328
JQLL01000001
Bacillota
Carnobacterium funditum DSM 5970 [JQLL]
320064
320139
+
Phe
GAA
[ENA]
¡û
>W141818389
JQLL01000001
Bacillota
Carnobacterium funditum DSM 5970 [JQLL]
618939
618864
-
Phe
GAA
[ENA]
¡û
>W141818640
JQLQ01000002
Bacillota
Carnobacterium pleistocenium FTR1 [JQLQ]
1186083
1186158
+
Phe
GAA
[ENA]
¡û
>W141818652
JQLQ01000002
Bacillota
Carnobacterium pleistocenium FTR1 [JQLQ]
1195332
1195407
+
Phe
GAA
[ENA]
¡û
>W141820914
JQNF01000003
Bacillota
Carnobacterium jeotgali MS3 [JQNF]
136246
136171
-
Phe
GAA
[ENA]
¡û
>W141820926
JQNF01000003
Bacillota
Carnobacterium jeotgali MS3 [JQNF]
121574
121499
-
Phe
GAA
[ENA]
¡û
>C141008751
CP006812
Bacillota
Carnobacterium inhibens subsp. gilichinskyi WN1359 [CP006812]
469171
469245
+
Phe
GAA
[Ensembl]
¡û
>C141008763
CP006812
Bacillota
Carnobacterium inhibens subsp. gilichinskyi WN1359 [CP006812]
1301354
1301279
-
Phe
GAA
[Ensembl]
¡û
>C141008775
CP006812
Bacillota
Carnobacterium inhibens subsp. gilichinskyi WN1359 [CP006812]
1288246
1288171
-
Phe
GAA
[Ensembl]
¡û
>W1810186790
PKHE01000024
Bacillota
Falseniella ignava UMB0898 [PKHE]
18454
18379
-
Phe
GAA
[ENA]
¡û
>C161028507
CP010796
Bacillota
Carnobacterium sp. CP1 [CP010796]
708000
707925
-
Phe
GAA
[Ensembl]
¡û
>C161028519
CP010796
Bacillota
Carnobacterium sp. CP1 [CP010796]
692866
692791
-
Phe
GAA
[Ensembl]
¡û
>W1710543768
FOAH01000008
Bacillota
Carnobacterium iners [FOAH]
80591
80516
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK