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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.295213 (53 seq.)
>W1711096466
LTHT01000236
Fusobacteriota
Fusobacterium sp. HMSC073F01 [LTHT]
122
47
-
His
GTG
[ENA]
¡û
>WENV181439085
OGDL01000213
[OGDL] metagenome; Human gut stool
5340
5415
+
His
GTG
[ENA]
¢þ
>WENV181454405
OGED01001323
[OGED] metagenome; Human gut stool
863
788
-
His
GTG
[ENA]
¢þ
>WENV181459384
OGEK01033379
[OGEK] metagenome; Human gut stool
254
179
-
His
GTG
[ENA]
¢þ
>WENV181460991
OGEM01000134
[OGEM] metagenome; Human gut stool
24182
24107
-
His
GTG
[ENA]
¢þ
>WENV181474141
OGFC01002198
[OGFC] metagenome; Human gut stool
8892
8817
-
His
GTG
[ENA]
¢þ
>WENV181475610
OGFE01000737
[OGFE] metagenome; Human gut stool
4590
4665
+
His
GTG
[ENA]
¢þ
>WENV181484179
OGFL01000722
[OGFL] metagenome; Human gut stool
24093
24018
-
His
GTG
[ENA]
¢þ
>WENV181551077
OGIN01000630
[OGIN] metagenome; Human gut stool
5341
5416
+
His
GTG
[ENA]
¢þ
>WENV181560464
OGJC01000269
[OGJC] metagenome; Human gut stool
39236
39311
+
His
GTG
[ENA]
¢þ
>WENV181561430
OGJD01002385
[OGJD] metagenome; Human gut stool
6411
6336
-
His
GTG
[ENA]
¢þ
>WENV181563128
OGJG01002425
[OGJG] metagenome; Human gut stool
5340
5415
+
His
GTG
[ENA]
¢þ
>WENV181569707
OGJM01000115
[OGJM] metagenome; Human gut stool
24105
24030
-
His
GTG
[ENA]
¢þ
>WENV181570207
OGJN01000106
[OGJN] metagenome; Human gut stool
66321
66396
+
His
GTG
[ENA]
¢þ
>WENV181573592
OGJR01022628
[OGJR] metagenome; Human gut stool
414
489
+
His
GTG
[ENA]
¢þ
>WENV181629861
OGMP01007541
[OGMP] metagenome; Human gut stool
146
71
-
His
GTG
[ENA]
¢þ
>WENV181651969
OGNW01000224
[OGNW] metagenome; Human gut stool
34051
34126
+
His
GTG
[ENA]
¢þ
>WENV181820504
OGUD01000047
[OGUD] metagenome; Human gut stool
24092
24017
-
His
GTG
[ENA]
¢þ
>WENV181860170
OGWR01000165
[OGWR] human gut metagenome; faeces
33724
33799
+
His
GTG
[ENA]
¢þ
>WENV181900530
OGXV01015551
[OGXV] human gut metagenome; faeces
2138
2063
-
His
GTG
[ENA]
¢þ
>WENV181946692
OGZD01000075
[OGZD] human gut metagenome; faeces
90245
90320
+
His
GTG
[ENA]
¢þ
>WENV181948002
OGZE01000162
[OGZE] human gut metagenome; faeces
30329
30404
+
His
GTG
[ENA]
¢þ
>WENV181974318
OHAB01011619
[OHAB] human gut metagenome; faeces
1659
1584
-
His
GTG
[ENA]
¢þ
>WENV181986830
OHAM01004846
[OHAM] human gut metagenome; faeces
5869
5794
-
His
GTG
[ENA]
¢þ
>WENV181994064
OHAS01009813
[OHAS] human gut metagenome; faeces
4107
4032
-
His
GTG
[ENA]
¢þ
>WENV182002858
OHBA01022180
[OHBA] human gut metagenome; feces
556
481
-
His
GTG
[ENA]
¢þ
>WENV182499002
OITR01003219
[OITR] human gut metagenome; human gut
78
153
+
His
GTG
[ENA]
¢þ
>WENV182866753
OKRR01001161
[OKRR] human gut metagenome; faeces
21745
21820
+
His
GTG
[ENA]
¢þ
>WENV182975122
OKXT01003523
[OKXT] human gut metagenome; human gut
1051
1126
+
His
GTG
[ENA]
¢þ
>WENV183290279
OLSH01000086
[OLSH] human gut metagenome; faeces
64362
64437
+
His
GTG
[ENA]
¢þ
>WENV183402258
OLZU01026150
[OLZU] human gut metagenome; feces
707
782
+
His
GTG
[ENA]
¢þ
>WENV183497856
OMGN01064527
[OMGN] human gut metagenome; feces
108
33
-
His
GTG
[ENA]
¢þ
>WENV183554541
OOBM01031344
[OOBM] human gut metagenome; human gut
54
129
+
His
GTG
[ENA]
¢þ
>WENV183576968
OOCJ01003680
[OOCJ] human gut metagenome; human gut
603
678
+
His
GTG
[ENA]
¢þ
>WENV183760935
PPYE01245718
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
792
717
-
His
GTG
[ENA]
¢þ
>C181003894
AP017968
Fusobacteriota
Fusobacterium varium Fv113-g1 [AP017968]
175520
175595
+
His
GTG
-
¡û
>C181160919
CP028102
Fusobacteriota
Fusobacterium mortiferum ATCC 9817 [CP028102]
632376
632451
+
His
GTG
-
¡û
>C181161019
CP028103
Fusobacteriota
Fusobacterium varium ATCC 27725 [CP028103]
924979
924904
-
His
GTG
-
¡û
>C181161077
CP028105
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [CP028105]
1223161
1223086
-
His
GTG
-
¡û
>C181216773
LS483487
Fusobacteriota
Fusobacterium ulcerans NCTC12112 [LS483487]
3211219
3211144
-
His
GTG
-
¡û
>C191210220
LR134390
Fusobacteriota
Fusobacterium varium NCTC10560 [LR134390]
3205315
3205390
+
His
GTG
-
¡û
>C191219282
LR215979
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [LR215979]
3067052
3066977
-
His
GTG
-
¡û
>W09118528
ACDB01000050
Fusobacteriota
Fusobacterium mortiferum ATCC 9817 [ACDB]
87745
87820
+
His
GTG
[ENA]
¡û
>W09118806
ACDH01000075
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [ACDH]
63026
63101
+
His
GTG
[ENA]
¡û
>W09125176
ACIE01000037
Fusobacteriota
Fusobacterium varium ATCC 27725 [ACIE]
43353
43428
+
His
GTG
[ENA]
¡û
>W1910194489
FAUS01000008
Fusobacteriota
Fusobacterium sp. [FAUS]
1088258
1088183
-
His
GTG
[ENA]
¡û
>W1810790042
QRHI01000019
Fusobacteriota
Fusobacterium mortiferum AM25-18LB [QRHI]
24088
24013
-
His
GTG
[ENA]
¡û
>W1810790191
QRHL01000028
Fusobacteriota
Fusobacterium mortiferum AM25-1 [QRHL]
24075
24000
-
His
GTG
[ENA]
¡û
>W1810791348
QRIG01000012
Fusobacteriota
Fusobacterium varium AM22-17 [QRIG]
26547
26622
+
His
GTG
[ENA]
¡û
>W1810818385
QSDE01000011
Fusobacteriota
Fusobacterium ulcerans OF01-15LB [QSDE]
34959
34884
-
His
GTG
[ENA]
¡û
>W1810832229
QSOW01000019
Fusobacteriota
Fusobacterium varium TM07-10 [QSOW]
21212
21137
-
His
GTG
[ENA]
¡û
>W1810839559
QSTZ01000006
Fusobacteriota
Fusobacterium mortiferum OM06-15BH [QSTZ]
92685
92760
+
His
GTG
[ENA]
¡û
>W121021770
AGWJ01000062
Fusobacteriota
Fusobacterium ulcerans 12_1B [AGWJ]
35458
35383
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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