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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.295214 (46 seq.)
>W1711096461
LTHT01000227
Fusobacteriota
Fusobacterium sp. HMSC073F01 [LTHT]
335
410
+
Ala
TGC
[ENA]
¡û
>WENV181047603
ODXZ01047415
[ODXZ] human metagenome; G_DNA_Stool
160
235
+
Ala
TGC
[ENA]
¢þ
>WENV181474298
OGFC01006353
[OGFC] metagenome; Human gut stool
1283
1208
-
Ala
TGC
[ENA]
¢þ
>WENV181557901
OGIW01000474
[OGIW] metagenome; Human gut stool
150
75
-
Ala
TGC
[ENA]
¢þ
>WENV181561484
OGJD01004387
[OGJD] metagenome; Human gut stool
1452
1527
+
Ala
TGC
[ENA]
¢þ
>WENV181579294
OGJY01055630
[OGJY] metagenome; Human gut stool
537
612
+
Ala
TGC
[ENA]
¢þ
>WENV181580174
OGJZ01008784
[OGJZ] metagenome; Human gut stool
2163
2088
-
Ala
TGC
[ENA]
¢þ
>WENV181623916
OGMJ01000485
[OGMJ] metagenome; Human gut stool
20939
21014
+
Ala
TGC
[ENA]
¢þ
>WENV181965242
OGZT01000020
[OGZT] human gut metagenome; faeces
72121
72046
-
Ala
TGC
[ENA]
¢þ
>WENV181971116
OGZY01003788
[OGZY] human gut metagenome; faeces
871
796
-
Ala
TGC
[ENA]
¢þ
>WENV182008148
OHBI01024953
[OHBI] human gut metagenome; feces
198
273
+
Ala
TGC
[ENA]
¢þ
>WENV182015666
OHBR01009681
[OHBR] human gut metagenome; feces
1625
1550
-
Ala
TGC
[ENA]
¢þ
>WENV182138589
OHKN01023893
[OHKN] human gut metagenome; feces
198
273
+
Ala
TGC
[ENA]
¢þ
>WENV182881916
OKSA01059238
[OKSA] human gut metagenome; faeces
42
117
+
Ala
TGC
[ENA]
¢þ
>WENV183290496
OLSH01000460
[OLSH] human gut metagenome; faeces
32975
33050
+
Ala
TGC
[ENA]
¢þ
>WENV183290534
OLSH01000535
[OLSH] human gut metagenome; faeces
30599
30524
-
Ala
TGC
[ENA]
¢þ
>WENV183760928
PPYE01245605
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1507
1582
+
Ala
TGC
[ENA]
¢þ
>WENV183760938
PPYE01246303
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1436
1511
+
Ala
TGC
[ENA]
¢þ
>WENV183764034
PPYE01312229
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
155
80
-
Ala
TGC
[ENA]
¢þ
>WENV183780521
PPYF01171833
[PPYF] human gut metagenome; stool from patient with Crohn's disease
34158
34233
+
Ala
TGC
[ENA]
¢þ
>WENV183780566
PPYF01172203
[PPYF] human gut metagenome; stool from patient with Crohn's disease
1481
1556
+
Ala
TGC
[ENA]
¢þ
>C181003919
AP017968
Fusobacteriota
Fusobacterium varium Fv113-g1 [AP017968]
1619400
1619475
+
Ala
TGC
-
¡û
>C181003932
AP017968
Fusobacteriota
Fusobacterium varium Fv113-g1 [AP017968]
3703939
3703864
-
Ala
TGC
-
¡û
>C181003943
AP017968
Fusobacteriota
Fusobacterium varium Fv113-g1 [AP017968]
1228089
1228014
-
Ala
TGC
-
¡û
>C181003946
AP017968
Fusobacteriota
Fusobacterium varium Fv113-g1 [AP017968]
1223459
1223384
-
Ala
TGC
-
¡û
>C181161047
CP028105
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [CP028105]
1593218
1593293
+
Ala
TGC
-
¡û
>C181161066
CP028105
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [CP028105]
3293292
3293217
-
Ala
TGC
-
¡û
>C181161069
CP028105
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [CP028105]
2496367
2496292
-
Ala
TGC
-
¡û
>C181161072
CP028105
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [CP028105]
2488795
2488720
-
Ala
TGC
-
¡û
>C181216743
LS483487
Fusobacteriota
Fusobacterium ulcerans NCTC12112 [LS483487]
42199
42274
+
Ala
TGC
-
¡û
>C181216791
LS483487
Fusobacteriota
Fusobacterium ulcerans NCTC12112 [LS483487]
1743679
1743604
-
Ala
TGC
-
¡û
>C181216794
LS483487
Fusobacteriota
Fusobacterium ulcerans NCTC12112 [LS483487]
945339
945264
-
Ala
TGC
-
¡û
>C181216797
LS483487
Fusobacteriota
Fusobacterium ulcerans NCTC12112 [LS483487]
937767
937692
-
Ala
TGC
-
¡û
>C191219259
LR215979
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [LR215979]
1970250
1970325
+
Ala
TGC
-
¡û
>C191219262
LR215979
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [LR215979]
1970615
1970690
+
Ala
TGC
-
¡û
>C191219274
LR215979
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [LR215979]
3548902
3548977
+
Ala
TGC
-
¡û
>C191219307
LR215979
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [LR215979]
1690448
1690373
-
Ala
TGC
-
¡û
>W09118780
ACDH01000038
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [ACDH]
33226
33151
-
Ala
TGC
[ENA]
¡û
>W09118782
ACDH01000039
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [ACDH]
780
705
-
Ala
TGC
[ENA]
¡û
>W1810818389
QSDE01000013
Fusobacteriota
Fusobacterium ulcerans OF01-15LB [QSDE]
40247
40322
+
Ala
TGC
[ENA]
¡û
>W1810818392
QSDE01000013
Fusobacteriota
Fusobacterium ulcerans OF01-15LB [QSDE]
45960
46035
+
Ala
TGC
[ENA]
¡û
>W121021736
AGWJ01000034
Fusobacteriota
Fusobacterium ulcerans 12_1B [AGWJ]
69885
69960
+
Ala
TGC
[ENA]
¡û
>W121021745
AGWJ01000034
Fusobacteriota
Fusobacterium ulcerans 12_1B [AGWJ]
30414
30339
-
Ala
TGC
[ENA]
¡û
>W121021783
AGWJ01000070
Fusobacteriota
Fusobacterium ulcerans 12_1B [AGWJ]
1896
1971
+
Ala
TGC
[ENA]
¡û
>W1710600937
FUWX01000005
Fusobacteriota
Cetobacterium ceti [FUWX]
69743
69818
+
Ala
TGC
[ENA]
¡û
>W1710601004
FUWX01000034
Fusobacteriota
Cetobacterium ceti [FUWX]
9149
9074
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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