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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.295685 (34 seq.)
>WENV180110871
OAPN01010730
[OAPN] marine metagenome; 2011
192
119
-
Thr
GGT
[ENA]
¢þ
>WENV180377528
OBON01036601
[OBON] marine metagenome; sea water
164
91
-
Thr
GGT
[ENA]
¢þ
>WENV180391146
OBPM01019143
[OBPM] marine metagenome; ENVO:00002010
266
193
-
Thr
GGT
[ENA]
¢þ
>WENV181368331
OFQL01000790
[OFQL] freshwater metagenome; Freshwater Lake
2020
2093
+
Thr
GGT
[ENA]
¢þ
>WENV181368834
OFQN01001283
[OFQN] freshwater metagenome; Freshwater Lake
190
117
-
Thr
GGT
[ENA]
¢þ
>WENV181369953
OFQR01003163
[OFQR] freshwater metagenome; Freshwater Lake
1247
1320
+
Thr
GGT
[ENA]
¢þ
>WENV181370333
OFQS01004042
[OFQS] freshwater metagenome; Freshwater Lake
157
84
-
Thr
GGT
[ENA]
¢þ
>WENV181838620
OGVN01005853
[OGVN] freshwater metagenome; freshwater
453
526
+
Thr
GGT
[ENA]
¢þ
>WENV170617144
FUWD012915477
[FUWD] metagenome; unknown
461
386
-
Thr
GGT
[ENA]
¢þ
>WENV170619934
FUWD013023124
[FUWD] metagenome; unknown
1199
1126
-
Thr
GGT
[ENA]
¢þ
>WENV170624896
FUWD013188509
[FUWD] metagenome; unknown
75
2
-
Thr
GGT
[ENA]
¢þ
>WENV170628057
FUWD013241223
[FUWD] metagenome; unknown
1199
1126
-
Thr
GGT
[ENA]
¢þ
>WENV170633159
FUWD013392253
[FUWD] metagenome; unknown
75
2
-
Thr
GGT
[ENA]
¢þ
>WENV170645566
JNSK01000166
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
2891
2964
+
Thr
GGT
[ENA]
¢þ
>C183000278
CP015605
Actinomycetota
Actinobacteria bacterium IMCC19121 [CP015605]
87391
87318
-
Thr
GGT
-
¡û
>C183000347
CP016776
Actinomycetota
Candidatus Planktophila vernalis [CP016776]
171692
171765
+
Thr
GGT
-
¡û
>C183000360
CP016782
Actinomycetota
Candidatus Planktophila limnetica [CP016782]
204882
204955
+
Thr
GGT
-
¡û
>C181018652
CP015603
Actinomycetota
Actinobacteria bacterium IMCC25003 [CP015603]
427782
427855
+
Thr
GGT
-
¡û
>C181018688
CP015604
Actinomycetota
Actinobacteria bacterium IMCC26103 [CP015604]
486542
486615
+
Thr
GGT
-
¡û
>C181020901
CP016770
Actinomycetota
Candidatus Planktophila dulcis [CP016770]
1125013
1124940
-
Thr
GGT
-
¡û
>C181020975
CP016772
Actinomycetota
Candidatus Planktophila dulcis [CP016772]
1138303
1138230
-
Thr
GGT
-
¡û
>C181021011
CP016773
Actinomycetota
Candidatus Planktophila sulfonica [CP016773]
1120991
1120918
-
Thr
GGT
-
¡û
>C181021047
CP016774
Actinomycetota
Candidatus Planktophila versatilis [CP016774]
1111268
1111195
-
Thr
GGT
-
¡û
>C181021084
CP016775
Actinomycetota
Candidatus Planktophila versatilis [CP016775]
1104638
1104565
-
Thr
GGT
-
¡û
>C181021159
CP016777
Actinomycetota
Candidatus Planktophila dulcis [CP016777]
1111281
1111208
-
Thr
GGT
-
¡û
>C181021196
CP016778
Actinomycetota
Candidatus Planktophila versatilis [CP016778]
1105732
1105659
-
Thr
GGT
-
¡û
>C181021309
CP016781
Actinomycetota
Candidatus Planktophila versatilis [CP016781]
1049929
1049856
-
Thr
GGT
-
¡û
>WENV039297
AACY021998517
Marine microbial communities from Global Ocean Sampling (GOS)
301
226
-
Thr
GGT
[ENA]
>WENV057826
AACY023308008
Marine microbial communities from Global Ocean Sampling (GOS)
375
450
+
Thr
GGT
[ENA]
>WENV058437
AACY023329341
Marine microbial communities from Global Ocean Sampling (GOS)
1010
935
-
Thr
GGT
[ENA]
>W1610625344
LIAM01000016
Actinomycetota
Actinobacteria bacterium BACL15 MAG-120619-bin91 [LIAM]
412
487
+
Thr
GGT
[ENA]
¡û
>W133003151
AQYZ01000021
Actinomycetota
actinobacterium SCGC AAA024-D14 [AQYZ]
8633
8558
-
Thr
GGT
[ENA]
¡û
>W133003156
AQZI01000003
Actinomycetota
actinobacterium SCGC AAA044-N04 [AQZI]
110372
110447
+
Thr
GGT
[ENA]
¡û
>W1710756471
LIAM01000016
Actinomycetota
Actinobacteria bacterium BACL15 MAG-120619-bin91 [LIAM]
412
487
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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