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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.295778 (105 seq.)
>W1710866841
LMHU01000008
Actinomycetota
Terrabacter sp. Root181 [LMHU]
283013
283088
+
His
GTG
[ENA]
¡û
>W1710868187
LMIW01000013
Actinomycetota
Terrabacter sp. Root85 [LMIW]
164693
164618
-
His
GTG
[ENA]
¡û
>W1710884789
LMWT01000024
Actinomycetota
Streptomyces avermitilis [LMWT]
88316
88243
-
His
GTG
[ENA]
¡û
>W1710997771
LQCG01000011
Actinomycetota
Streptomyces canus [LQCG]
98269
98342
+
His
GTG
[ENA]
¡û
>W1711236481
LYDS01000505
Actinomycetota
Streptomyces acidiscabies [LYDS]
7580
7507
-
His
GTG
[ENA]
¡û
>W1711236549
LYDT01000701
Actinomycetota
Streptomyces acidiscabies [LYDT]
10043
9970
-
His
GTG
[ENA]
¡û
>W1711312310
MAST01000019
Actinomycetota
Humibacillus sp. DSM 29435 [MAST]
44894
44969
+
His
GTG
[ENA]
¡û
>W1711505805
MKVV01000109
Actinomycetota
Pseudonocardia sp. 73-21 [MKVV]
51384
51459
+
His
GTG
[ENA]
¡û
>W1711517409
MLJO01000003
Actinomycetota
Intrasporangium flavum flava [MLJO]
292344
292419
+
His
GTG
[ENA]
¡û
>W1711628561
MPOH02000011
Actinomycetota
Streptomyces phaeoluteigriseus [MPOH]
427133
427206
+
His
GTG
[ENA]
¡û
>W1711662233
MQUH01000008
Actinomycetota
Streptomyces sp. M1013 [MQUH]
357873
357946
+
His
GTG
[ENA]
¡û
>W1711721789
MTJO01000002
Actinomycetota
Streptomyces avermitilis [MTJO]
442715
442642
-
His
GTG
[ENA]
¡û
>W1711738243
MUBA01000276
Actinomycetota
Streptomyces bobili [MUBA]
7426
7353
-
His
GTG
[ENA]
¡û
>W1711751011
MUNI01000466
Actinomycetota
Streptomyces reticuliscabiei [MUNI]
16661
16734
+
His
GTG
[ENA]
¡û
>W1712017795
NEVC01000017
Actinomycetota
Streptomyces sp. CS113 [NEVC]
256645
256572
-
His
GTG
[ENA]
¡û
>W1712084151
NHQT01000031
Actinomycetota
Nocardioides sp. XL1 [NHQT]
62184
62109
-
His
GTG
[ENA]
¡û
>W131185552
ARTT01000015
Actinomycetota
Terracoccus sp. 273MFTsu3.1 [ARTT]
102162
102087
-
His
GTG
[ENA]
¡û
>W131227574
AUFG01000017
Actinomycetota
Arsenicicoccus bolidensis DSM 15745 [AUFG]
25028
24953
-
His
GTG
[ENA]
¡û
>W131000158
AEJB01000174
Actinomycetota
Streptomyces turgidiscabies Car8 [AEJB]
793
866
+
His
GTG
[ENA]
¡û
>W131185396
ARTR01000047
Actinomycetota
Streptomyces sp. 303MFCol5.2 [ARTR]
100736
100809
+
His
GTG
[ENA]
¡û
>C020583
BA000030
Actinomycetota
Streptomyces avermitilis MA-4680 = NBRC 14893 [BA000030]
6372777
6372705
-
His
GTG
[Ensembl]
¡û
>C020813
AL645882
Actinomycetota
Streptomyces coelicolor [AL645882]
3049397
3049469
+
His
GTG
[Ensembl]
¡û
>WENV180344958
OBLL01400618
[OBLL] soil metagenome; soil
114
189
+
His
GTG
[ENA]
¢þ
>WENV170554173
CXWK01051637
[CXWK] wastewater metagenome; activated sludge
22363
22438
+
His
GTG
[ENA]
¢þ
>WENV170956425
MJUP01001241
[MJUP] soil metagenome; viral particles from soil sample MGM
609
536
-
His
GTG
[ENA]
¢þ
>C191123630
CP034350
Actinomycetota
Streptomyces sp. W1SF4 [CP034350]
5957536
5957463
-
His
GTG
-
¡û
>C191123687
CP034353
Actinomycetota
Streptomyces sp. KPB2 [CP034353]
5220283
5220210
-
His
GTG
-
¡û
>W09103265
AAJB01000020
Actinomycetota
Nocardioides sp. JS614 [AAJB]
47542
47467
-
His
GTG
[ENA]
¡û
>W09120778
ACEW01000271
Actinomycetota
Streptomyces sp. C [ACEW]
75111
75184
+
His
GTG
[ENA]
¡û
>W09120821
ACEW01000457
Actinomycetota
Streptomyces sp. C [ACEW]
5051
4978
-
His
GTG
[ENA]
¡û
>W09120927
ACEY01000206
Actinomycetota
Streptomyces lividans TK24 [ACEY]
6810
6737
-
His
GTG
[ENA]
¡û
>W141755121
JNWJ01000023
Actinomycetota
Streptomyces yerevanensis [JNWJ]
105998
106071
+
His
GTG
[ENA]
¡û
>W141756671
JNXI01000005
Actinomycetota
Streptomyces iakyrus [JNXI]
24777
24850
+
His
GTG
[ENA]
¡û
>W141759376
JNZH01000010
Actinomycetota
Streptomyces xanthophaeus [JNZH]
185449
185522
+
His
GTG
[ENA]
¡û
>W141763625
JOCE01000014
Actinomycetota
Streptomyces violaceoruber [JOCE]
91052
90979
-
His
GTG
[ENA]
¡û
>W141764786
JOCX01000031
Actinomycetota
Streptomyces sp. NRRL S-244 [JOCX]
100453
100526
+
His
GTG
[ENA]
¡û
>W141765636
JODM01000003
Actinomycetota
Streptomyces violaceorubidus [JODM]
138397
138470
+
His
GTG
[ENA]
¡û
>W141767870
JOEW01000026
Actinomycetota
Streptomyces lavendulae subsp. lavendulae [JOEW]
28585
28658
+
His
GTG
[ENA]
¡û
>W141769303
JOFT01000006
Actinomycetota
Streptomyces xanthophaeus [JOFT]
184014
184087
+
His
GTG
[ENA]
¡û
>W141769552
JOFX01000002
Actinomycetota
Streptomyces sp. NRRL F-2664 [JOFX]
112065
111992
-
His
GTG
[ENA]
¡û
>W141770256
JOGJ01000002
Actinomycetota
Streptomyces sp. NRRL F-5635 [JOGJ]
253562
253489
-
His
GTG
[ENA]
¡û
>W141770399
JOGL01002880
Actinomycetota
Streptomyces sp. NRRL F-5638 [JOGL]
774
701
-
His
GTG
[ENA]
¡û
>W141770936
JOGV01000015
Actinomycetota
Streptomyces sp. NRRL F-5650 [JOGV]
41845
41918
+
His
GTG
[ENA]
¡û
>W141771372
JOHC01004216
Actinomycetota
Streptomyces sp. NRRL S-1833 [JOHC]
291
364
+
His
GTG
[ENA]
¡û
>W141771726
JOHJ01000005
Actinomycetota
Streptomyces sp. NRRL F-5555 [JOHJ]
526250
526323
+
His
GTG
[ENA]
¡û
>W141772448
JOHV01000005
Actinomycetota
Streptomyces sp. NRRL F-5065 [JOHV]
19096
19169
+
His
GTG
[ENA]
¡û
>W141773553
JOIN01000011
Actinomycetota
Corynebacterium variabile [JOIN]
37785
37860
+
His
GTG
[ENA]
¡û
>W1910001468
AQRJ01000062
Actinomycetota
Streptomyces sp. AmelKG-E11A [AQRJ]
57194
57267
+
His
GTG
[ENA]
¡û
>W1910179379
BJHX01000001
Actinomycetota
Streptomyces avermitilis NBRC 14893 [BJHX]
5166830
5166757
-
His
GTG
[ENA]
¡û
>W1910179413
BJHY01000001
Actinomycetota
Streptomyces avermitilis ATCC 31267 [BJHY]
3902889
3902962
+
His
GTG
[ENA]
¡û
>W1910179480
BJHZ01000001
Actinomycetota
Streptomyces avermitilis cw2 [BJHZ]
2810742
2810815
+
His
GTG
[ENA]
¡û
>W1910804673
MTHG01000011
Actinomycetota
Streptomyces sp. 46 [MTHG]
134679
134606
-
His
GTG
[ENA]
¡û
>W1910810432
MULI01000013
Actinomycetota
Streptomyces sp. MH60 [MULI]
85209
85282
+
His
GTG
[ENA]
¡û
>W1910810947
MUYY01000008
Actinomycetota
Streptomyces sp. 111WW2 [MUYY]
87862
87935
+
His
GTG
[ENA]
¡û
>W1911279252
NTGE01000213
Actinomycetota
Streptomyces sp. SA15 [NTGE]
27664
27737
+
His
GTG
[ENA]
¡û
>W1911552877
PCGS01000045
Actinomycetota
Streptomyces acidiscabies ST105 [PCGS]
24945
25018
+
His
GTG
[ENA]
¡û
>W1911823562
QZVR01000007
Actinomycetota
Nocardioides ferulae SZ4R5S7 [QZVR]
25403
25478
+
His
GTG
[ENA]
¡û
>W1810000313
BEWC01000007
Actinomycetota
Streptomyces ardesiacus subsp. ardesiacus NBRC 15402 [BEWC]
576599
576672
+
His
GTG
[ENA]
¡û
>W1810000331
BEWC01000015
Actinomycetota
Streptomyces ardesiacus subsp. ardesiacus NBRC 15402 [BEWC]
48622
48695
+
His
GTG
[ENA]
¡û
>W1810000368
BEWD01000007
Actinomycetota
Streptomyces rubrogriseus NBRC 15455 [BEWD]
262959
262886
-
His
GTG
[ENA]
¡û
>W1810072947
PEFP01000001
Actinomycetota
Streptomyces sp. 61 [PEFP]
4939631
4939558
-
His
GTG
[ENA]
¡û
>W1810224193
POUC01000327
Actinomycetota
Streptomyces cahuitamycinicus 13K301 [POUC]
6967
6894
-
His
GTG
[ENA]
¡û
>W1810885694
QUNN01000001
Actinomycetota
Streptomyces sp. 2221.1 [QUNN]
3241836
3241909
+
His
GTG
[ENA]
¡û
>C151090472
CP012070
Actinomycetota
Arsenicicoccus sp. oral taxon 190 F0371 [CP012070]
2032169
2032094
-
His
GTG
-
¡û
>C151105038
LN850107
Actinomycetota
Alloactinosynnema sp. L-07 [LN850107]
44197
44270
+
His
GTG
-
¡û
>W1510003293
BAVY01000027
Actinomycetota
Streptomyces avermitilis MA-4680 = NBRC 14893 [BAVY]
113150
113223
+
His
GTG
[ENA]
¡û
>W1510012722
BBNN01000027
Actinomycetota
Streptomyces sp. NBRC 110035 [BBNN]
121954
122027
+
His
GTG
[ENA]
¡û
>W1510015576
BBRC01000015
Actinomycetota
Demequina lutea NBRC 106155 [BBRC]
53840
53765
-
His
GTG
[ENA]
¡û
>W1510021692
BBZE01000011
Actinomycetota
Streptomyces sp. TP-A0875 [BBZE]
226039
225966
-
His
GTG
[ENA]
¡û
>W1510071723
CDGT01000024
Actinomycetota
Mobilicoccus massiliensis SIT2 [CDGT]
284191
284266
+
His
GTG
[ENA]
¡û
>W1511360236
JRZE01000001
Actinomycetota
Saccharomonospora viridis JCM 3315 [JRZE]
119288
119363
+
His
GTG
[ENA]
¡û
>W1511517099
JXWX01000031
Actinomycetota
Streptomyces sp. WM6391 [JXWX]
37206
37133
-
His
GTG
[ENA]
¡û
>W1511534726
JYOE01000011
Actinomycetota
Terrabacter sp. 28 [JYOE]
194689
194764
+
His
GTG
[ENA]
¡û
>W1511544196
JZJK01000072
Actinomycetota
Streptomyces avermitilis MA-4680 = NBRC 14893 [JZJK]
78239
78312
+
His
GTG
[ENA]
¡û
>W11155946
AFAQ01001763
Actinomycetota
Rhodococcus sp. R04 [AFAQ]
5105
5030
-
His
GTG
[ENA]
¡û
>W1511684108
LFML01000013
Actinomycetota
Streptomyces roseus ATCC 31245 [LFML]
33635
33708
+
His
GTG
[ENA]
¡û
>W1511695660
LGCX01000259
Actinomycetota
Streptomyces sp. NRRL F-4711 [LGCX]
118820
118747
-
His
GTG
[ENA]
¡û
>W1511695902
LGDB01000178
Actinomycetota
Streptomyces sp. WM6372 [LGDB]
144292
144365
+
His
GTG
[ENA]
¡û
>W1511696277
LGDG01000288
Actinomycetota
Streptomyces sp. MMG1533 [LGDG]
25966
26039
+
His
GTG
[ENA]
¡û
>W1511697325
LGDW01000062
Actinomycetota
Streptomyces sp. NRRL WC-3618 [LGDW]
63736
63809
+
His
GTG
[ENA]
¡û
>W1511697876
LGEF01000116
Actinomycetota
Streptomyces sp. NRRL F-4707 [LGEF]
41843
41916
+
His
GTG
[ENA]
¡û
>C161021860
CP009754
Actinomycetota
Streptomyces sp. CCM_MD2014 [CP009754]
5592286
5592213
-
His
GTG
[Ensembl]
¡û
>C161083008
CP015098
Actinomycetota
Streptomyces qaidamensis S10 [CP015098]
3371002
3371075
+
His
GTG
[Ensembl]
¡û
>W121126654
BAHD01000078
Actinomycetota
Kineosphaera limosa NBRC 100340 [BAHD]
10385
10460
+
His
GTG
[ENA]
¡û
>W1610061209
BCMK01000069
Actinomycetota
Streptomyces acidiscabies [BCMK]
25728
25801
+
His
GTG
[ENA]
¡û
>W1610061332
BCMN01000010
Actinomycetota
Streptomyces turgidiscabies [BCMN]
41214
41287
+
His
GTG
[ENA]
¡û
>W1610632308
LIPS01000718
Actinomycetota
Streptomyces hirsutus cyanoalbus [LIPS]
4962
4889
-
His
GTG
[ENA]
¡û
>W1610633875
LIQZ01000539
Actinomycetota
Streptomyces phaeochromogenes [LIQZ]
655
582
-
His
GTG
[ENA]
¡û
>W1610634287
LIRG01001017
Actinomycetota
Streptomyces prasinopilosus [LIRG]
449
376
-
His
GTG
[ENA]
¡û
>W1610729187
LMHU01000008
Actinomycetota
Terrabacter sp. Root181 [LMHU]
283013
283088
+
His
GTG
[ENA]
¡û
>W1610730533
LMIW01000013
Actinomycetota
Terrabacter sp. Root85 [LMIW]
164693
164618
-
His
GTG
[ENA]
¡û
>W1610746715
LMWT01000024
Actinomycetota
Streptomyces avermitilis [LMWT]
88316
88243
-
His
GTG
[ENA]
¡û
>W1610852500
LQCG01000011
Actinomycetota
Streptomyces canus [LQCG]
98269
98342
+
His
GTG
[ENA]
¡û
>W1710058804
BCMK01000069
Actinomycetota
Streptomyces acidiscabies [BCMK]
25728
25801
+
His
GTG
[ENA]
¡û
>W1710058997
BCMN01000010
Actinomycetota
Streptomyces turgidiscabies [BCMN]
41214
41287
+
His
GTG
[ENA]
¡û
>W1710503925
FMHM01000005
Actinomycetota
Streptomyces sp. AmelKG-E11A Streptomyces [FMHM]
298999
299072
+
His
GTG
[ENA]
¡û
>W1710512417
FMZK01000001
Actinomycetota
Streptomyces prasinopilosus emeiensis [FMZK]
211836
211763
-
His
GTG
[ENA]
¡û
>W1710513236
FMZZ01000012
Actinomycetota
Actinokineospora iranica iranicum [FMZZ]
30351
30278
-
His
GTG
[ENA]
¡û
>W1710518161
FNDV01000007
Actinomycetota
Actinokineospora alba album [FNDV]
51526
51451
-
His
GTG
[ENA]
¡û
>W1710524892
FNJB01000017
Actinomycetota
Actinokineospora alba album [FNJB]
51526
51451
-
His
GTG
[ENA]
¡û
>W1710536991
FNTO01000001
Actinomycetota
Streptomyces sp. 2231.1 [FNTO]
3532197
3532270
+
His
GTG
[ENA]
¡û
>W1710717962
LFBV01000010
Actinomycetota
Streptomyces uncialis [LFBV]
639699
639772
+
His
GTG
[ENA]
¡û
>W1710766694
LIPS01000718
Actinomycetota
Streptomyces hirsutus cyanoalbus [LIPS]
4962
4889
-
His
GTG
[ENA]
¡û
>W1710768307
LIQZ01000539
Actinomycetota
Streptomyces phaeochromogenes [LIQZ]
655
582
-
His
GTG
[ENA]
¡û
>W1710768664
LIRG01001017
Actinomycetota
Streptomyces prasinopilosus [LIRG]
449
376
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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