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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.295849 (113 seq.)
>W1710862432
LMEJ01000011
Alphaproteobacteria
Sphingomonas sp. Root1294 [LMEJ]
198178
198103
-
Trp
CCA
[ENA]
¡û
>W1710863905
LMFM01000001
Alphaproteobacteria
Sphingomonas sp. Root50 [LMFM]
198135
198060
-
Trp
CCA
[ENA]
¡û
>W1710866240
LMHH01000003
Alphaproteobacteria
Altererythrobacter sp. Root672 [LMHH]
463536
463611
+
Trp
CCA
[ENA]
¡û
>W1710867305
LMID01000015
Alphaproteobacteria
Sphingomonas sp. Root720 [LMID]
329620
329695
+
Trp
CCA
[ENA]
¡û
>W1711074447
LSJO01000019
Alphaproteobacteria
Sphingomonas sp. CCH9-F2 [LSJO]
9105
9030
-
Trp
CCA
[ENA]
¡û
>W1711386365
MEFG01000018
Alphaproteobacteria
Sphingomonas sp. SCN 67-18 [MEFG]
66856
66931
+
Trp
CCA
[ENA]
¡û
>W1711705054
MSQB01000026
Alphaproteobacteria
Novosphingobium panipatense [MSQB]
57990
57915
-
Trp
CCA
[ENA]
¡û
>C171056590
CP017075
Alphaproteobacteria
Novosphingobium resinovorum SA1 [CP017075]
1884702
1884627
-
Trp
CCA
-
¡û
>C171075863
CP018221
Alphaproteobacteria
Tardibacter chloracetimidivorans JJ-A5 [CP018221]
165739
165814
+
Trp
CCA
-
¡û
>W131213841
ATTI01000001
Alphaproteobacteria
Sphingomonas phyllosphaerae 5.2 [ATTI]
3257250
3257325
+
Trp
CCA
[ENA]
¡û
>W131219258
ATYK01000002
Alphaproteobacteria
Sphingomonas phyllosphaerae FA2 [ATYK]
1515653
1515728
+
Trp
CCA
[ENA]
¡û
>WENV180020096
FTCV01001805
[FTCV] metagenome; soil
8342
8267
-
Trp
CCA
[ENA]
¡û
>WENV180311013
OBJT01086342
[OBJT] soil metagenome; soil
118
43
-
Trp
CCA
[ENA]
¡û
>WENV183636275
OOKD01000015
[OOKD] human gut metagenome; Skin biopsy
141807
141882
+
Trp
CCA
[ENA]
¡û
>WENV183673399
ORJL011272838
[ORJL] groundwater metagenome; groundwater
5
80
+
Leu
CAA
[ENA]
¡û
>WENV183679845
ORMF010112100
[ORMF] groundwater metagenome; groundwater
192
267
+
Trp
CCA
[ENA]
¡û
>WENV183729155
PJTQ01007369
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
1416
1341
-
Trp
CCA
[ENA]
¡û
>WENV183730406
PJTS01000005
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
103434
103359
-
Trp
CCA
[ENA]
¡û
>WENV183731485
PJTT01000008
[PJTT] soil metagenome; Soil (2) enriched on wood chips
563603
563678
+
Trp
CCA
[ENA]
¡û
>WENV183731557
PJTT01000022
[PJTT] soil metagenome; Soil (2) enriched on wood chips
103434
103359
-
Trp
CCA
[ENA]
¡û
>WENV183740738
PJUF01008177
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
535
610
+
Trp
CCA
[ENA]
¡û
>WENV170003526
AGTN01367344
[AGTN] bioreactor metagenome; poplar biomass
20
95
+
Trp
CCA
[ENA]
¡û
>WENV170121467
CENM01028077
[CENM] marine metagenome genome assembly TARA_032_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
900
825
-
Trp
CCA
[ENA]
¡û
>WENV170668208
LADL02001870
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
12606
12531
-
Trp
CCA
[ENA]
¡û
>WENV170991841
MWWA01344053
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
158
233
+
Trp
CCA
[ENA]
¡û
>W141484924
JFYZ01000002
Alphaproteobacteria
Novosphingobium resinovorum [JFYZ]
48131
48206
+
Trp
CCA
[ENA]
¡û
>C181081632
CP023449
Alphaproteobacteria
Rhizorhabdus dicambivorans Ndbn-20 [CP023449]
682349
682274
-
Trp
CCA
-
¡û
>C191144175
CP035501
Alphaproteobacteria
Sphingosinicella sp. BN140058 [CP035501]
4121307
4121232
-
Trp
CCA
-
¡û
>W141564477
JIAU01000006
Alphaproteobacteria
Sphingomonas sp. URHD0057 [JIAU]
271895
271970
+
Trp
CCA
[ENA]
¡û
>C141006087
CP006644
Alphaproteobacteria
Sphingomonas sanxanigenens DSM 19645 = NX02 [CP006644]
318821
318896
+
Trp
CCA
[Ensembl]
¡û
>W1910651522
LYMM01000062
Alphaproteobacteria
Novosphingobium guangzhouense SA925 [LYMM]
244872
244797
-
Trp
CCA
[ENA]
¡û
>W1911411157
NWUF01000015
Alphaproteobacteria
Rhizorhabdus dicambivorans Ndbn-20m [NWUF]
23496
23571
+
Trp
CCA
[ENA]
¡û
>W1911411910
NWVC01000002
Alphaproteobacteria
Sphingomonas adhaesiva DSM 7418 [NWVC]
156215
156290
+
Trp
CCA
[ENA]
¡û
>W1911411949
NWVD01000001
Alphaproteobacteria
Sphingomonas ginsenosidimutans KACC 14949 [NWVD]
755158
755083
-
Trp
CCA
[ENA]
¡û
>W1911719120
QQWX01000009
Alphaproteobacteria
Sphingomonas sp. ABOLF S-NIH.Pt19_1214 [QQWX]
169296
169221
-
Trp
CCA
[ENA]
¡û
>W1911823507
QZVQ01000004
Alphaproteobacteria
Croceibacterium ferulae SX2RGS8 [QZVQ]
416889
416964
+
Trp
CCA
[ENA]
¡û
>W1810090320
PGFU01000001
Alphaproteobacteria
Sphingomonas carotinifaciens B093034 [PGFU]
244901
244976
+
Trp
CCA
[ENA]
¡û
>W1810858406
QTJP01000001
Alphaproteobacteria
Sphingomonas crusticola MIMD3 [QTJP]
1128600
1128525
-
Trp
CCA
[ENA]
¡û
>W2010311512
CABWMU010000005
Alphaproteobacteria
Sphingomonas sp. 8AM [CABWMU]
110354
110429
+
Trp
CCA
[ENA]
¡û
>W2010370617
CAHJXD010000179
Alphaproteobacteria
Sphingomonas bacterium [CAHJXD]
7983
7908
-
Trp
CCA
[ENA]
¡û
>W2010438017
JAAAPO010000001
Alphaproteobacteria
Novosphingobium sp. FSY-8 [JAAAPO]
124214
124289
+
Trp
CCA
[ENA]
¡û
>W2010459402
JAAFZT010000050
Alphaproteobacteria
Altererythrobacter sp. SALINAS58 [JAAFZT]
111504
111579
+
Trp
CCA
[ENA]
¡û
>W2010534558
JAAOZC010000001
Alphaproteobacteria
Sphingomonas vulcanisoli CECT 8804 [JAAOZC]
115343
115268
-
Trp
CCA
[ENA]
¡û
>W2010567537
JAATJE010000001
Alphaproteobacteria
Sphingomonas jejuensis DSM 27651 [JAATJE]
876271
876196
-
Trp
CCA
[ENA]
¡û
>W2010585613
JABAID010000017
Alphaproteobacteria
Novosphingobium sp. ERN07 [JABAID]
47335
47410
+
Trp
CCA
[ENA]
¡û
>W2010586943
JABASZ010000032
Alphaproteobacteria
Altererythrobacter sp. JL3514 [JABASZ]
209236
209161
-
Trp
CCA
[ENA]
¡û
>W2010694876
JACHBT010000003
Alphaproteobacteria
Sphingomonas endophytica AS3.13 [JACHBT]
238900
238975
+
Trp
CCA
[ENA]
¡û
>W2010711933
JACHNZ010000009
Alphaproteobacteria
Sphingosinicella soli DSM 17328 [JACHNZ]
84540
84465
-
Trp
CCA
[ENA]
¡û
>W2010719150
JACHZH010000004
Alphaproteobacteria
Sphingomonas sp. BK069 [JACHZH]
295909
295984
+
Trp
CCA
[ENA]
¡û
>W2010724160
JACIDD010000001
Alphaproteobacteria
Sphingomonas desiccabilis DSM 16792 [JACIDD]
139943
139868
-
Trp
CCA
[ENA]
¡û
>W2010726412
JACIEY010000003
Alphaproteobacteria
Sphingomonas carotinifaciens DSM 27347 [JACIEY]
354474
354549
+
Trp
CCA
[ENA]
¡û
>W2010746110
JACLAW010000013
Alphaproteobacteria
Novosphingobium flavum NBRC 111647 [JACLAW]
17430
17505
+
Trp
CCA
[ENA]
¡û
>W2011137859
NWUF01000015
Alphaproteobacteria
Rhizorhabdus dicambivorans Ndbn-20m [NWUF]
23496
23571
+
Trp
CCA
[ENA]
¡û
>W2011138411
NWVC01000002
Alphaproteobacteria
Sphingomonas adhaesiva DSM 7418 [NWVC]
156215
156290
+
Trp
CCA
[ENA]
¡û
>W2011138450
NWVD01000001
Alphaproteobacteria
Sphingomonas ginsenosidimutans KACC 14949 [NWVD]
755158
755083
-
Trp
CCA
[ENA]
¡û
>W2011287110
QQWX01000009
Alphaproteobacteria
Sphingomonas sp. ABOLF S-NIH.Pt19_1214 [QQWX]
169296
169221
-
Trp
CCA
[ENA]
¡û
>W2011350497
QZVQ01000004
Alphaproteobacteria
Croceibacterium ferulae SX2RGS8 [QZVQ]
416889
416964
+
Trp
CCA
[ENA]
¡û
>W2011353772
RAPF01000005
Alphaproteobacteria
Altererythrobacter sp. HN-Y73 [RAPF]
135895
135970
+
Trp
CCA
[ENA]
¡û
>W2011549763
SDPT01000001
Alphaproteobacteria
Sphingomonas desiccabilis CP1D [SDPT]
139975
139900
-
Trp
CCA
[ENA]
¡û
>W2011623259
SLXN01000003
Alphaproteobacteria
Sphingomonas sp. BK235 [SLXN]
91490
91415
-
Trp
CCA
[ENA]
¡û
>W2011652646
SNZX01000001
Alphaproteobacteria
Novosphingobium sp. GV013 [SNZX]
305434
305509
+
Trp
CCA
[ENA]
¡û
>W2011653251
SOAI01000001
Alphaproteobacteria
Novosphingobium sp. GV002 [SOAI]
305434
305509
+
Trp
CCA
[ENA]
¡û
>W2011706757
SWKR01000002
Alphaproteobacteria
Sphingomonas sp. L-1-4w-11 [SWKR]
66492
66417
-
Trp
CCA
[ENA]
¡û
>W2012097938
VNIM01000043
Alphaproteobacteria
Sphingomonas sp. R4DWN [VNIM]
27958
28033
+
Trp
CCA
[ENA]
¡û
>W2012432526
WSUT01000005
Alphaproteobacteria
Sphingomonas carotinifaciens DSM 27347 [WSUT]
3271891
3271966
+
Trp
CCA
[ENA]
¡û
>W2012439043
WTYK01000006
Alphaproteobacteria
Altererythrobacter soli MCCC 1K02066 [WTYK]
94304
94229
-
Trp
CCA
[ENA]
¡û
>W2012468419
WVTD01000003
Alphaproteobacteria
Novosphingobium sp. FGD1 [WVTD]
281076
281001
-
Trp
CCA
[ENA]
¡û
>W2110196005
JABXWS010000046
Alphaproteobacteria
Novosphingobium sp. HR1a [JABXWS]
17440
17365
-
Trp
CCA
[ENA]
¡û
>W2110319252
JADHDT010000003
Alphaproteobacteria
Sphingomonas sp. REN5 [JADHDT]
265730
265805
+
Trp
CCA
[ENA]
¡û
>W2110372069
JADQDC010000014
Alphaproteobacteria
Novosphingobium jiangmenense 1Y9A [JADQDC]
39174
39099
-
Trp
CCA
[ENA]
¡û
>W2110446163
JAERSC010000002
Alphaproteobacteria
Sphingomonas sp. REN5-1 [JAERSC]
392447
392522
+
Trp
CCA
[ENA]
¡û
>W2110600282
JAHFVK010000002
Alphaproteobacteria
Croceibacterium sp. LX-88 [JAHFVK]
443766
443691
-
Trp
CCA
[ENA]
¡û
>W2110663342
JAHXZL010000007
Alphaproteobacteria
Sphingomonas sp. RHCKR7 [JAHXZL]
216572
216497
-
Trp
CCA
[ENA]
¡û
>W2110663437
JAHXZN010000002
Alphaproteobacteria
Sphingomonas sp. RRHST34 [JAHXZN]
301152
301227
+
Trp
CCA
[ENA]
¡û
>W2110663585
JAHXZS010000001
Alphaproteobacteria
Aquisediminimonas sediminicola CH68-4 [JAHXZS]
1153969
1154044
+
Trp
CCA
[ENA]
¡û
>W2110690833
JAIOKB010000003
Alphaproteobacteria
Sphingomonas yunnanensis YIM 3 [JAIOKB]
77647
77572
-
Trp
CCA
[ENA]
¡û
>C201182052
CP046535
Alphaproteobacteria
Sphingomonas sp. LMO-1 [CP046535]
2499706
2499781
+
Trp
CCA
-
¡û
>C211031784
CP021247
Alphaproteobacteria
Novosphingobium sp. KA1 [CP021247, CP021248]
2527144
2527219
+
Trp
CCA
-
¡û
>C211136848
CP060697
Alphaproteobacteria
Sphingomonas sp. sand1-3 [CP060697]
2419319
2419244
-
Trp
CCA
-
¡û
>C211137732
CP060718
Alphaproteobacteria
Sphingomonas lutea KCTC 23642 [CP060718]
652729
652656
-
Trp
CCA
-
¡û
>C211138786
CP060782
Alphaproteobacteria
Sphingomonas sediminicola KACC 15039 [CP060782]
537695
537620
-
Trp
CCA
-
¡û
>C211177384
CP063445
Alphaproteobacteria
Novosphingobium sp. ES2-1 [CP063445]
2517518
2517443
-
Trp
CCA
-
¡û
>C231259927
CP089301
Alphaproteobacteria
Novosphingobium sp. Sx8-5 NBRC [CP089301]
2530326
2530251
-
Trp
CCA
-
¡û
>C231441514
CP101740
Alphaproteobacteria
Sphingomonas qomolangmaensis S5-59 [CP101740]
225331
225256
-
Trp
CCA
-
¡û
>C231536472
CP110678
Alphaproteobacteria
Sphingomonas sp. S1-29 [CP110678]
3213190
3213115
-
Trp
CCA
-
¡û
>C231595902
CP117411
Alphaproteobacteria
Sphingomonas naphthae KACC 18716 [CP117411]
258299
258224
-
Trp
CCA
-
¡û
>C241105717
CP046120
Alphaproteobacteria
Novosphingobium sp. Gsoil 351 [CP046120]
2017580
2017505
-
Trp
CCA
-
¡û
>C241282393
CP128492
Alphaproteobacteria
Novosphingobium resinovorum HR1a [CP128491, CP128492]
2462730
2462655
-
Trp
CCA
-
¡û
>C241365929
CP141588
Alphaproteobacteria
Sphingomonas sp. LY54 [CP141588]
855082
855157
+
Trp
CCA
-
¡û
>W2310022537
BSFC01000044
Alphaproteobacteria
Novosphingobium resinovorum VKM B-1172 [BSFC]
333977
334052
+
Trp
CCA
[ENA]
¡û
>W1511352565
JROH01000015
Alphaproteobacteria
Sphingomonas sp. 37zxx [JROH]
9538
9613
+
Trp
CCA
[ENA]
¡û
>W1511356992
JRVC01000003
Alphaproteobacteria
Novosphingobium subterraneum DSM 12447 [JRVC]
236146
236221
+
Trp
CCA
[ENA]
¡û
>W1511398357
JTDN01000001
Alphaproteobacteria
Croceibacterium mercuriale Coronado [JTDN]
1344358
1344283
-
Trp
CCA
[ENA]
¡û
>W1511581098
LARW01000052
Alphaproteobacteria
Sphingomonas sp. SRS2 [LARW]
41420
41495
+
Trp
CCA
[ENA]
¡û
>W11167375
AFMP01000065
Alphaproteobacteria
Sphingomonas sp. KC8 [AFMP]
3688
3613
-
Trp
CCA
[ENA]
¡û
>W121086731
AKKE01000095
Alphaproteobacteria
Novosphingobium sp. AP12 [AKKE]
29572
29497
-
Trp
CCA
[ENA]
¡û
>W121119237
ALVC01000203
Alphaproteobacteria
Sphingomonas sp. LH128 [ALVC]
9011
8936
-
Trp
CCA
[ENA]
¡û
>W1610074536
BCWT01000137
Alphaproteobacteria
Sphingomonas adhaesiva NBRC 15099 [BCWT]
2171
2246
+
Trp
CCA
[ENA]
¡û
>W1610077024
BCZF01000003
Alphaproteobacteria
Novosphingobium subterraneum NBRC 16086 [BCZF]
165040
165115
+
Trp
CCA
[ENA]
¡û
>W1610590984
LDRW01000016
Alphaproteobacteria
Novosphingobium barchaimii [LDRW]
73076
73001
-
Trp
CCA
[ENA]
¡û
>W1610592875
LDTB01000064
Alphaproteobacteria
Sphingomonas endophytica [LDTB]
53992
54067
+
Trp
CCA
[ENA]
¡û
>W1610724778
LMEJ01000011
Alphaproteobacteria
Sphingomonas sp. Root1294 [LMEJ]
198178
198103
-
Trp
CCA
[ENA]
¡û
>W1610726251
LMFM01000001
Alphaproteobacteria
Sphingomonas sp. Root50 [LMFM]
198135
198060
-
Trp
CCA
[ENA]
¡û
>W1610728586
LMHH01000003
Alphaproteobacteria
Altererythrobacter sp. Root672 [LMHH]
463536
463611
+
Trp
CCA
[ENA]
¡û
>W1610729651
LMID01000015
Alphaproteobacteria
Sphingomonas sp. Root720 [LMID]
329620
329695
+
Trp
CCA
[ENA]
¡û
>W1610913752
LSJO01000019
Alphaproteobacteria
Sphingomonas sp. CCH9-F2 [LSJO]
9105
9030
-
Trp
CCA
[ENA]
¡û
>W1710071654
BCWT01000137
Alphaproteobacteria
Sphingomonas adhaesiva NBRC 15099 [BCWT]
2171
2246
+
Trp
CCA
[ENA]
¡û
>W1710074713
BCZF01000003
Alphaproteobacteria
Novosphingobium subterraneum NBRC 16086 [BCZF]
165040
165115
+
Trp
CCA
[ENA]
¡û
>W1710514912
FNBI01000001
Alphaproteobacteria
Sphingomonas carotinifaciens S7-754 [FNBI]
354720
354795
+
Trp
CCA
[ENA]
¡û
>W1710606009
FWXL01000012
Alphaproteobacteria
Novosphingobium sp. B1 [FWXL]
45103
45028
-
Trp
CCA
[ENA]
¡û
>W1710710264
LDRW01000016
Alphaproteobacteria
Novosphingobium barchaimii [LDRW]
73076
73001
-
Trp
CCA
[ENA]
¡û
>W1710712155
LDTB01000064
Alphaproteobacteria
Sphingomonas endophytica [LDTB]
53992
54067
+
Trp
CCA
[ENA]
¡û
>W1710743483
LGVA01000039
Alphaproteobacteria
Sphingomonas sp. Ndbn-20 [LGVA]
23419
23494
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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