This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.296559 (76 seq.)
>W1710882822
LMVD01000026
Bacillota
Lactiplantibacillus plantarum [LMVD]
17141
17215
+
Asn
GTT
[ENA]
¡û
>W1711003452
LQHD01000046
Bacillota
Lactiplantibacillus plantarum [LQHD]
45327
45253
-
Asn
GTT
[ENA]
¡û
>W1711081514
LSST01000025
Bacillota
Lactiplantibacillus plantarum [LSST]
117152
117226
+
Asn
GTT
[ENA]
¡û
>W1711091333
LTCD01000022
Bacillota
Lactiplantibacillus plantarum [LTCD]
117152
117226
+
Asn
GTT
[ENA]
¡û
>W1711133308
LUWR01000052
Bacillota
Lactiplantibacillus plantarum [LUWR]
18280
18208
-
Asn
GTT
[ENA]
¡û
>W1711133474
LUWU01000018
Bacillota
Lactiplantibacillus plantarum [LUWU]
117262
117336
+
Asn
GTT
[ENA]
¡û
>W1711133910
LUXB01000070
Bacillota
Lactiplantibacillus plantarum [LUXB]
4401
4475
+
Asn
GTT
[ENA]
¡û
>W1711134209
LUXG01000056
Bacillota
Lactiplantibacillus plantarum [LUXG]
18280
18208
-
Asn
GTT
[ENA]
¡û
>W1711134665
LUXO01000033
Bacillota
Lactiplantibacillus plantarum [LUXO]
467965
467891
-
Asn
GTT
[ENA]
¡û
>W1711485710
MKED01000011
Bacillota
Lactiplantibacillus plantarum [MKED]
67981
68053
+
Asn
GTT
[ENA]
¡û
>W1711485781
MKEE01000034
Bacillota
Lactiplantibacillus plantarum [MKEE]
20390
20318
-
Asn
GTT
[ENA]
¡û
>C171061552
CP017363
Bacillota
Lactiplantibacillus plantarum TMW 1.277 [CP017363]
2080751
2080677
-
Asn
GTT
-
¡û
>WENV180189572
OAWY01000383
[OAWY] human gut metagenome; faeces
27759
27685
-
Asn
GTT
[ENA]
¢þ
>W141086283
AUTE01000010
Bacillota
Lactiplantibacillus plantarum WJL [AUTE]
78930
79004
+
Asn
GTT
[ENA]
¡û
>W141096404
AVFI01000115
Bacillota
Lactiplantibacillus plantarum 2165 [AVFI]
30140
30214
+
Asn
GTT
[ENA]
¡û
>C181019925
CP016491
Bacillota
Lactiplantibacillus pentosus BGM48 [CP016491]
1206414
1206488
+
Asn
GTT
-
¡û
>C181090171
CP023772
Bacillota
Lactiplantibacillus plantarum PC520 [CP023772]
2614871
2614797
-
Asn
GTT
-
¡û
>C191088190
CP032359
Bacillota
Lactiplantibacillus plantarum ZFM55 [CP032359]
1214699
1214773
+
Asn
GTT
-
¡û
>C191088192
CP032359
Bacillota
Lactiplantibacillus plantarum ZFM55 [CP032359]
1273848
1273923
+
Asn
GTT
-
¡û
>C191094348
CP032757
Bacillota
Lactiplantibacillus pentosus DSM 20314 [CP032757]
2458168
2458094
-
Asn
GTT
-
¡û
>C191144820
CP035571
Bacillota
Lactiplantibacillus plantarum SRCM103303 [CP035571]
968776
968850
+
Asn
GTT
-
¡û
>W1910584046
JXRM01000002
Bacillota
Lactiplantibacillus plantarum INF 15D [JXRM]
317295
317221
-
Asn
GTT
[ENA]
¡û
>W1910750124
MJHE01000089
Bacillota
Lactiplantibacillus plantarum RI-029 [MJHE]
24396
24322
-
Asn
GTT
[ENA]
¡û
>W1910750147
MJHF01000024
Bacillota
Lactiplantibacillus pentosus RI-031 [MJHF]
32136
32210
+
Asn
GTT
[ENA]
¡û
>W1910797412
MSTY01000015
Bacillota
Lactiplantibacillus plantarum E6-1 [MSTY]
43778
43852
+
Asn
GTT
[ENA]
¡û
>W1910797523
MSUA01000018
Bacillota
Lactiplantibacillus plantarum E6-3 [MSUA]
32033
32107
+
Asn
GTT
[ENA]
¡û
>W1910797636
MSUC01000017
Bacillota
Lactiplantibacillus plantarum E6-5 [MSUC]
48715
48641
-
Asn
GTT
[ENA]
¡û
>W1910797857
MSUG01000021
Bacillota
Lactiplantibacillus plantarum M4-3 [MSUG]
32033
32107
+
Asn
GTT
[ENA]
¡û
>W1910798184
MSUM01000014
Bacillota
Lactiplantibacillus plantarum Y2-5 [MSUM]
32033
32107
+
Asn
GTT
[ENA]
¡û
>W1910798357
MSUP01000052
Bacillota
Lactiplantibacillus plantarum A2-1 [MSUP]
26049
25975
-
Asn
GTT
[ENA]
¡û
>W1910798614
MSUU01000036
Bacillota
Lactiplantibacillus plantarum A4-2 [MSUU]
1975
2049
+
Asn
GTT
[ENA]
¡û
>W1910798815
MSUY01000035
Bacillota
Lactiplantibacillus plantarum A6-2 [MSUY]
25832
25758
-
Asn
GTT
[ENA]
¡û
>W1910798869
MSUZ01000073
Bacillota
Lactiplantibacillus plantarum A7-1 [MSUZ]
24619
24545
-
Asn
GTT
[ENA]
¡û
>W1910799522
MSVM01000029
Bacillota
Lactiplantibacillus plantarum B5-2 [MSVM]
24619
24545
-
Asn
GTT
[ENA]
¡û
>W1910799584
MSVN01000041
Bacillota
Lactiplantibacillus plantarum B6-1 [MSVN]
1640
1714
+
Asn
GTT
[ENA]
¡û
>W1910800032
MSVW01000195
Bacillota
Lactiplantibacillus plantarum H31.2.2 [MSVW]
14543
14469
-
Asn
GTT
[ENA]
¡û
>W1910800100
MSVX01000054
Bacillota
Lactiplantibacillus plantarum H31.3.1 [MSVX]
24619
24545
-
Asn
GTT
[ENA]
¡û
>W1910800510
MSWF01000039
Bacillota
Lactiplantibacillus plantarum R3.1.1 [MSWF]
1975
2049
+
Asn
GTT
[ENA]
¡û
>W1910800599
MSWH01000041
Bacillota
Lactiplantibacillus plantarum R3.2.1 [MSWH]
26002
25928
-
Asn
GTT
[ENA]
¡û
>W1910800664
MSWI01000047
Bacillota
Lactiplantibacillus plantarum R3.2.2 [MSWI]
1975
2049
+
Asn
GTT
[ENA]
¡û
>W1910801050
MSWQ01000033
Bacillota
Lactiplantibacillus plantarum R5.1.1 [MSWQ]
26002
25928
-
Asn
GTT
[ENA]
¡û
>W1910801167
MSWS01000082
Bacillota
Lactiplantibacillus plantarum R5.2.1 [MSWS]
24619
24545
-
Asn
GTT
[ENA]
¡û
>W1910801410
MSWX01000040
Bacillota
Lactiplantibacillus plantarum R6.1.2 [MSWX]
24619
24545
-
Asn
GTT
[ENA]
¡û
>W1910801580
MSXA01000037
Bacillota
Lactiplantibacillus plantarum R6.3.1 [MSXA]
25832
25758
-
Asn
GTT
[ENA]
¡û
>W1910801717
MSXD01000040
Bacillota
Lactiplantibacillus plantarum R7.1.2 [MSXD]
26002
25928
-
Asn
GTT
[ENA]
¡û
>W1910801804
MSXF01000015
Bacillota
Lactiplantibacillus plantarum R7.2.2 [MSXF]
24619
24545
-
Asn
GTT
[ENA]
¡û
>W1910922902
NIGL01000002
Bacillota
Lactiplantibacillus plantarum M92C [NIGL]
35675
35601
-
Asn
GTT
[ENA]
¡û
>W1910954389
NJPU01000004
Bacillota
Lactiplantibacillus plantarum subsp. plantarum SRCM101520 [NJPU]
295722
295796
+
Asn
GTT
[ENA]
¡û
>W1911632010
PUFM01000012
Bacillota
Lactiplantibacillus pentosus ATCC 8041 [PUFM]
32523
32597
+
Asn
GTT
[ENA]
¡û
>W1810357525
PVNW01000201
Bacillota
Lactiplantibacillus pentosus IG7 [PVNW]
150201
150275
+
Asn
GTT
[ENA]
¡û
>W1810357724
PVNZ01000130
Bacillota
Lactiplantibacillus pentosus IG4 [PVNZ]
36758
36684
-
Asn
GTT
[ENA]
¡û
>W1810488849
QAZQ01000002
Bacillota
Lactiplantibacillus plantarum DS8_9 [QAZQ]
307232
307306
+
Asn
GTT
[ENA]
¡û
>W1810489007
QAZS01000008
Bacillota
Lactiplantibacillus plantarum DS13_9 [QAZS]
176107
176033
-
Asn
GTT
[ENA]
¡û
>W1810504414
QBKW01000016
Bacillota
Lactiplantibacillus plantarum 49 [QBKW]
63796
63722
-
Asn
GTT
[ENA]
¡û
>C151046212
CP009236
Bacillota
Lactiplantibacillus plantarum 5-2 [CP009236]
2178514
2178440
-
Asn
GTT
-
¡û
>W1511313167
JPSU01000005
Bacillota
Lactiplantibacillus plantarum FMNP01 [JPSU]
435387
435461
+
Asn
GTT
[ENA]
¡û
>W1511683988
LFLY01000004
Bacillota
Lactiplantibacillus pentosus FL0421 [LFLY]
188945
188871
-
Asn
GTT
[ENA]
¡û
>C161051725
CP013130
Bacillota
Lactiplantibacillus paraplantarum L-ZS9 [CP013130]
2238798
2238724
-
Asn
GTT
-
¡û
>W1610033280
AZCU01000009
Bacillota
Lactiplantibacillus pentosus DSM 20314 [AZCU]
36523
36449
-
Asn
GTT
[ENA]
¡û
>C131016810
CP006033
Bacillota
Lactiplantibacillus plantarum 16 [CP006033]
2059834
2059760
-
Asn
GTT
[Ensembl]
¡û
>W1610528055
JQAW01000090
Bacillota
Lactiplantibacillus plantarum [JQAW]
35069
34995
-
Asn
GTT
[ENA]
¡û
>W1610744748
LMVD01000026
Bacillota
Lactiplantibacillus plantarum [LMVD]
17141
17215
+
Asn
GTT
[ENA]
¡û
>W1610854017
LQHD01000046
Bacillota
Lactiplantibacillus plantarum [LQHD]
45327
45253
-
Asn
GTT
[ENA]
¡û
>W1610920349
LSST01000025
Bacillota
Lactiplantibacillus plantarum [LSST]
117152
117226
+
Asn
GTT
[ENA]
¡û
>W1610925477
LTCD01000022
Bacillota
Lactiplantibacillus plantarum [LTCD]
117152
117226
+
Asn
GTT
[ENA]
¡û
>W1610944273
LUWP01000055
Bacillota
Lactiplantibacillus plantarum [LUWP]
55198
55272
+
Asn
GTT
[ENA]
¡û
>W1610944381
LUWR01000052
Bacillota
Lactiplantibacillus plantarum [LUWR]
18280
18208
-
Asn
GTT
[ENA]
¡û
>W1610944547
LUWU01000018
Bacillota
Lactiplantibacillus plantarum [LUWU]
117262
117336
+
Asn
GTT
[ENA]
¡û
>W1610944983
LUXB01000070
Bacillota
Lactiplantibacillus plantarum [LUXB]
4401
4475
+
Asn
GTT
[ENA]
¡û
>W1610945282
LUXG01000056
Bacillota
Lactiplantibacillus plantarum [LUXG]
18280
18208
-
Asn
GTT
[ENA]
¡û
>W1610945738
LUXO01000033
Bacillota
Lactiplantibacillus plantarum [LUXO]
467965
467891
-
Asn
GTT
[ENA]
¡û
>W1710030552
AZCU01000009
Bacillota
Lactiplantibacillus pentosus DSM 20314 [AZCU]
36523
36449
-
Asn
GTT
[ENA]
¡û
>W1710629645
JQAW01000090
Bacillota
Lactiplantibacillus plantarum [JQAW]
35069
34995
-
Asn
GTT
[ENA]
¡û
>W1710715861
LEBE01000006
Bacillota
Lactiplantibacillus plantarum [LEBE]
26732
26658
-
Asn
GTT
[ENA]
¡û
>W1710715966
LEBF01000015
Bacillota
Lactiplantibacillus plantarum [LEBF]
167695
167621
-
Asn
GTT
[ENA]
¡û
>W1710716753
LEBU01000011
Bacillota
Lactiplantibacillus plantarum [LEBU]
26731
26657
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK