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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.296886 (81 seq.)
>W1711047376
LROZ01000001
Bacteroidota
Myroides odoratus [LROZ]
238731
238806
+
Gly
GCC
[ENA]
¡û
>W1711047378
LROZ01000001
Bacteroidota
Myroides odoratus [LROZ]
250113
250188
+
Gly
GCC
[ENA]
¡û
>W141042757
AMEU01000036
Bacteroidota
Capnocytophaga sp. oral taxon 326 oral taxon 326 str. F0382 [AMEU]
21855
21782
-
Gly
GCC
[ENA]
¡û
>WENV180698594
ODDH01030995
[ODDH] human metagenome; G_DNA_Buccal mucosa
289
362
+
Gly
GCC
[ENA]
¢þ
>WENV180718549
ODGG01012264
[ODGG] human metagenome; G_DNA_Buccal mucosa
117
44
-
Gly
GCC
[ENA]
¢þ
>WENV180720555
ODGJ01068063
[ODGJ] human metagenome; G_DNA_Tongue dorsum
232
159
-
Gly
GCC
[ENA]
¢þ
>WENV180750068
ODHS01000360
[ODHS] human metagenome; G_DNA_Supragingival plaque
2107
2034
-
Gly
GCC
[ENA]
¢þ
>WENV180750173
ODHS01000628
[ODHS] human metagenome; G_DNA_Supragingival plaque
20221
20148
-
Gly
GCC
[ENA]
¢þ
>WENV180750290
ODHS01001246
[ODHS] human metagenome; G_DNA_Supragingival plaque
6642
6569
-
Gly
GCC
[ENA]
¢þ
>WENV180750333
ODHS01001386
[ODHS] human metagenome; G_DNA_Supragingival plaque
10380
10307
-
Gly
GCC
[ENA]
¢þ
>WENV180750694
ODHS01005823
[ODHS] human metagenome; G_DNA_Supragingival plaque
1888
1815
-
Gly
GCC
[ENA]
¢þ
>WENV180777843
ODIM01000005
[ODIM] human metagenome; G_DNA_Supragingival plaque
196722
196795
+
Gly
GCC
[ENA]
¢þ
>WENV180777951
ODIM01000132
[ODIM] human metagenome; G_DNA_Supragingival plaque
28278
28205
-
Gly
GCC
[ENA]
¢þ
>WENV180777969
ODIM01000162
[ODIM] human metagenome; G_DNA_Supragingival plaque
28591
28664
+
Gly
GCC
[ENA]
¢þ
>WENV180808604
ODJK01000283
[ODJK] human metagenome; G_DNA_Subgingival plaque
5046
5119
+
Gly
GCC
[ENA]
¢þ
>WENV180808969
ODJK01002342
[ODJK] human metagenome; G_DNA_Subgingival plaque
6529
6602
+
Gly
GCC
[ENA]
¢þ
>WENV180810206
ODJK01156633
[ODJK] human metagenome; G_DNA_Subgingival plaque
346
273
-
Gly
GCC
[ENA]
¢þ
>WENV180822208
ODJT01000081
[ODJT] human metagenome; G_DNA_Supragingival plaque
58425
58352
-
Gly
GCC
[ENA]
¢þ
>WENV180846413
ODKT01010661
[ODKT] human metagenome; G_DNA_Supragingival plaque
271
198
-
Gly
CCC
[ENA]
¢þ
>WENV180921447
ODTJ01000062
[ODTJ] human metagenome; G_DNA_Supragingival plaque
91040
91113
+
Gly
GCC
[ENA]
¢þ
>WENV180921750
ODTJ01000349
[ODTJ] human metagenome; G_DNA_Supragingival plaque
24427
24500
+
Gly
GCC
[ENA]
¢þ
>WENV180922250
ODTJ01002113
[ODTJ] human metagenome; G_DNA_Supragingival plaque
313
240
-
Gly
GCC
[ENA]
¢þ
>WENV180922313
ODTJ01002579
[ODTJ] human metagenome; G_DNA_Supragingival plaque
8976
9049
+
Gly
GCC
[ENA]
¢þ
>WENV180923244
ODTJ01084019
[ODTJ] human metagenome; G_DNA_Supragingival plaque
1
74
+
Gly
GCC
[ENA]
¢þ
>WENV180943562
ODUC01000977
[ODUC] human metagenome; G_DNA_Supragingival plaque
8440
8513
+
Gly
GCC
[ENA]
¢þ
>WENV180943748
ODUC01002267
[ODUC] human metagenome; G_DNA_Supragingival plaque
603
530
-
Gly
GCC
[ENA]
¢þ
>WENV180943850
ODUC01003256
[ODUC] human metagenome; G_DNA_Supragingival plaque
4171
4244
+
Gly
GCC
[ENA]
¢þ
>WENV180944149
ODUC01008888
[ODUC] human metagenome; G_DNA_Supragingival plaque
876
803
-
Gly
CCC
[ENA]
¢þ
>WENV180944700
ODUC01029791
[ODUC] human metagenome; G_DNA_Supragingival plaque
686
759
+
Gly
CCC
[ENA]
¢þ
>WENV180945641
ODUC01292834
[ODUC] human metagenome; G_DNA_Supragingival plaque
184
111
-
Gly
GCC
[ENA]
¢þ
>WENV180990298
ODVN01000812
[ODVN] human metagenome; G_DNA_Tongue dorsum
22543
22470
-
Gly
GCC
[ENA]
¢þ
>WENV181018701
ODWU01000032
[ODWU] human metagenome; G_DNA_Supragingival plaque
18013
17940
-
Gly
GCC
[ENA]
¢þ
>WENV181018980
ODWU01000291
[ODWU] human metagenome; G_DNA_Supragingival plaque
10234
10307
+
Gly
GCC
[ENA]
¢þ
>WENV181069829
OEAE01000006
[OEAE] human metagenome; G_DNA_Supragingival plaque
191509
191582
+
Gly
GCC
[ENA]
¢þ
>WENV181069873
OEAE01000022
[OEAE] human metagenome; G_DNA_Supragingival plaque
80090
80163
+
Gly
GCC
[ENA]
¢þ
>WENV181069928
OEAE01000055
[OEAE] human metagenome; G_DNA_Supragingival plaque
40869
40942
+
Gly
GCC
[ENA]
¢þ
>WENV181070082
OEAE01000214
[OEAE] human metagenome; G_DNA_Supragingival plaque
37061
36988
-
Gly
GCC
[ENA]
¢þ
>WENV181078767
OEAS01000476
[OEAS] human metagenome; G_DNA_Supragingival plaque
10546
10619
+
Gly
GCC
[ENA]
¢þ
>WENV181079508
OEAS01007802
[OEAS] human metagenome; G_DNA_Supragingival plaque
1
74
+
Gly
GCC
[ENA]
¢þ
>WENV181079973
OEAS01021428
[OEAS] human metagenome; G_DNA_Supragingival plaque
2495
2568
+
Gly
GCC
[ENA]
¢þ
>WENV181080401
OEAS01045518
[OEAS] human metagenome; G_DNA_Supragingival plaque
1376
1449
+
Gly
GCC
[ENA]
¢þ
>WENV181081243
OEAS01157351
[OEAS] human metagenome; G_DNA_Supragingival plaque
184
111
-
Gly
GCC
[ENA]
¢þ
>WENV181081477
OEAS01223091
[OEAS] human metagenome; G_DNA_Supragingival plaque
226
299
+
Gly
GCC
[ENA]
¢þ
>WENV181082908
OEAV01001267
[OEAV] human metagenome; G_DNA_Supragingival plaque
297
224
-
Gly
CCC
[ENA]
¢þ
>WENV181121369
OEFL01002980
[OEFL] human metagenome; G_DNA_Supragingival plaque
500
573
+
Gly
GCC
[ENA]
¢þ
>WENV181121538
OEFL01007179
[OEFL] human metagenome; G_DNA_Supragingival plaque
2881
2954
+
Gly
GCC
[ENA]
¢þ
>WENV181140757
OEGT01000108
[OEGT] human metagenome; G_DNA_Throat
49388
49461
+
Gly
GCC
[ENA]
¢þ
>WENV181140931
OEGT01000409
[OEGT] human metagenome; G_DNA_Throat
3239
3312
+
Gly
GCC
[ENA]
¢þ
>WENV181140955
OEGT01000476
[OEGT] human metagenome; G_DNA_Throat
22678
22751
+
Gly
GCC
[ENA]
¢þ
>WENV181177336
OEJS01000802
[OEJS] human metagenome; G_DNA_Supragingival plaque
8135
8062
-
Gly
GCC
[ENA]
¢þ
>WENV181178337
OEJS01177792
[OEJS] human metagenome; G_DNA_Supragingival plaque
190
117
-
Gly
GCC
[ENA]
¢þ
>W141143702
AWSR01000021
Bacteroidota
Capnocytophaga sp. oral taxon 863 oral taxon 863 str. F0517 [AWSR]
74955
75028
+
Gly
CCC
[ENA]
¡û
>WENV183731167
PJTS01014919
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
320
247
-
Gly
GCC
[ENA]
¢þ
>C181063535
CP022379
Bacteroidota
Capnocytophaga sputigena D1179 [CP022379]
2716752
2716679
-
Gly
GCC
-
¡û
>C181063628
CP022381
Bacteroidota
Capnocytophaga sp. H2931 [CP022381]
1288208
1288135
-
Gly
GCC
-
¡û
>C181063671
CP022382
Bacteroidota
Capnocytophaga canimorsus 7120 [CP022382]
2246756
2246683
-
Gly
GCC
-
¡û
>C181063785
CP022385
Bacteroidota
Capnocytophaga sputigena KC1668 [CP022385]
755606
755679
+
Gly
GCC
-
¡û
>C181063987
CP022389
Bacteroidota
Capnocytophaga canimorsus H3936 [CP022389]
2258707
2258634
-
Gly
GCC
-
¡û
>C181178732
CP029463
Bacteroidota
Flavobacterium sediminis MEBiC07310 [CP029463]
1997021
1997094
+
Gly
GCC
-
¡û
>C191008581
CP010992
Bacteroidota
Flavobacterium columnare B185 [CP010992]
2491257
2491330
+
Gly
GCC
-
¡û
>C191008584
CP010992
Bacteroidota
Flavobacterium columnare B185 [CP010992]
2491664
2491737
+
Gly
GCC
-
¡û
>W1910804155
MTCX01000016
Bacteroidota
Flavobacterium columnare 1201 [MTCX]
44699
44772
+
Gly
GCC
[ENA]
¡û
>W1910804174
MTCX01000058
Bacteroidota
Flavobacterium columnare 1201 [MTCX]
17449
17376
-
Gly
GCC
[ENA]
¡û
>W1911239261
NSDI01000011
Bacteroidota
Capnocytophaga canis 17-158 [NSDI]
76259
76332
+
Gly
GCC
[ENA]
¡û
>W1911564305
PCMX01000008
Bacteroidota
Flavobacterium columnare NBRC 100251 = ATCC 23463 [PCMX]
8674
8601
-
Gly
GCC
[ENA]
¡û
>W1911564308
PCMX01000008
Bacteroidota
Flavobacterium columnare NBRC 100251 = ATCC 23463 [PCMX]
8268
8195
-
Gly
GCC
[ENA]
¡û
>W1810355132
PVLU01000003
Bacteroidota
Flavobacterium columnare MS-FC-4 [PVLU]
1208181
1208254
+
Gly
GCC
[ENA]
¡û
>W1810355135
PVLU01000003
Bacteroidota
Flavobacterium columnare MS-FC-4 [PVLU]
1208588
1208661
+
Gly
GCC
[ENA]
¡û
>W1510076303
CDOH01000090
Bacteroidota
Capnocytophaga canis CcD95 [CDOH]
46159
46232
+
Gly
GCC
[ENA]
¡û
>C161059452
CP013690
Bacteroidota
Myroides odoratimimus PR63039 [CP013690]
1876759
1876684
-
Gly
GCC
[Ensembl]
¡û
>C161063718
CP013992
Bacteroidota
Flavobacterium covae 94-081 [CP013992]
2760496
2760423
-
Gly
GCC
[Ensembl]
¡û
>C161063721
CP013992
Bacteroidota
Flavobacterium covae 94-081 [CP013992]
2760083
2760010
-
Gly
GCC
[Ensembl]
¡û
>W1610029736
AXDE01000005
Bacteroidota
Ornithobacterium rhinotracheale H06-030791 [AXDE]
194580
194655
+
Gly
GCC
[ENA]
¡û
>W1610061517
BCMQ01000013
Bacteroidota
Myroides odoratimimus [BCMQ]
858
783
-
Gly
GCC
[ENA]
¡û
>W121009160
AGED01000009
Bacteroidota
Myroides odoratimimus CCUG 12901 [AGED]
890
815
-
Gly
GCC
[ENA]
¡û
>W1610888505
LROZ01000001
Bacteroidota
Myroides odoratus [LROZ]
238731
238806
+
Gly
GCC
[ENA]
¡û
>W1610888507
LROZ01000001
Bacteroidota
Myroides odoratus [LROZ]
250113
250188
+
Gly
GCC
[ENA]
¡û
>WENV080129
AATO01007873
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
710
785
+
Gly
GCC
[ENA]
>W1710027106
AXDE01000005
Bacteroidota
Ornithobacterium rhinotracheale H06-030791 [AXDE]
194580
194655
+
Gly
GCC
[ENA]
¡û
>W1710059182
BCMQ01000013
Bacteroidota
Myroides odoratimimus [BCMQ]
858
783
-
Gly
GCC
[ENA]
¡û
>W1710551289
FOFY01000008
Bacteroidota
Myroides profundi [FOFY]
113107
113032
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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