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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.297606 (19 seq.)
>W1711705091
MSQD01000001
Bacillota
Thermoanaerobacterium sp. PSU-2 [MSQD]
6213
6138
-
Phe
GAA
[ENA]
¡û
>W1711705125
MSQD01000030
Bacillota
Thermoanaerobacterium sp. PSU-2 [MSQD]
497
569
+
Phe
GAA
[ENA]
¡û
>WENV180283738
OBID01002215
[OBID] metagenome; sludge
6457
6382
-
Phe
GAA
[ENA]
¢þ
>WENV180284501
OBID01049635
[OBID] metagenome; sludge
534
459
-
Phe
GAA
[ENA]
¢þ
>W141238341
BBKT01000020
Bacillota
Thermoanaerobacterium saccharolyticum [BBKT]
16082
16007
-
Phe
GAA
[ENA]
¡û
>W141238377
BBKT01000088
Bacillota
Thermoanaerobacterium saccharolyticum [BBKT]
563
488
-
Phe
GAA
[ENA]
¡û
>WENV183655376
OQWD01015763
[OQWD] human gut metagenome; human gut
830
755
-
Phe
GAA
[ENA]
¢þ
>WENV170638052
JFBN01406919
[JFBN] chicken gut metagenome; ceca of Broiler chicken
129
54
-
Phe
GAA
[ENA]
¢þ
>WENV170638694
JFBN01522287
[JFBN] chicken gut metagenome; ceca of Broiler chicken
135
60
-
Phe
GAA
[ENA]
¢þ
>C181021909
CP016893
Bacillota
Thermoanaerobacterium thermosaccharolyticum TG57 [CP016893]
1622661
1622736
+
Phe
GAA
-
¡û
>C181021937
CP016893
Bacillota
Thermoanaerobacterium thermosaccharolyticum TG57 [CP016893]
340983
340908
-
Phe
GAA
-
¡û
>W09134984
ACVG01000003
Bacillota
Thermoanaerobacterium thermosaccharolyticum DSM 571 [ACVG]
63758
63833
+
Phe
GAA
[ENA]
¡û
>W09134996
ACVG01000009
Bacillota
Thermoanaerobacterium thermosaccharolyticum DSM 571 [ACVG]
82617
82542
-
Phe
GAA
[ENA]
¡û
>W1910747721
MINB01000020
Bacillota
Thermoanaerobacterium thermosaccharolyticum GSU5 [MINB]
6601
6526
-
Phe
GAA
[ENA]
¡û
>W1910747728
MINB01000022
Bacillota
Thermoanaerobacterium thermosaccharolyticum GSU5 [MINB]
48648
48573
-
Phe
GAA
[ENA]
¡û
>C10113826
CP002171
Bacillota
Thermoanaerobacterium thermosaccharolyticum DSM 571 [CP002171]
454679
454754
+
Phe
GAA
[Ensembl]
¡û
>C10113852
CP002171
Bacillota
Thermoanaerobacterium thermosaccharolyticum DSM 571 [CP002171]
1987949
1987874
-
Phe
GAA
[Ensembl]
¡û
>C121007621
CP003184
Bacillota
Thermoanaerobacterium saccharolyticum JW/SL-YS485 [CP003184]
1084665
1084740
+
Phe
GAA
[Ensembl]
¡û
>C121007645
CP003184
Bacillota
Thermoanaerobacterium saccharolyticum JW/SL-YS485 [CP003184]
2509936
2509861
-
Phe
GAA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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