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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.297693 (119 seq.)
>W1711066562
LSCY01000008
Actinomycetota
Corynebacterium kroppenstedtii [LSCY]
273988
274061
+
Val
TAC
[ENA]
¡û
>W1711097639
LTIW01000015
Actinomycetota
Corynebacterium sp. HMSC058E07 [LTIW]
22322
22247
-
Val
TAC
[ENA]
¡û
>W1711186045
LWNW01000041
Actinomycetota
Corynebacterium sp. HMSC08A12 [LWNW]
17714
17789
+
Val
TAC
[ENA]
¡û
>W1711187067
LWOT01000042
Actinomycetota
Corynebacterium sp. HMSC28B08 [LWOT]
10547
10622
+
Val
TAC
[ENA]
¡û
>W1711492389
MKKI01000042
Actinomycetota
Corynebacterium sp. CNJ-954 [MKKI]
197383
197308
-
Val
TAC
[ENA]
¡û
>W1711717125
MTGK01000049
Actinomycetota
Corynebacterium jeikeium [MTGK]
38055
37980
-
Val
TAC
[ENA]
¡û
>C171001898
CP009245
Actinomycetota
Corynebacterium aquilae DSM 44791 S-613 [CP009245]
2053877
2053802
-
Val
TAC
-
¡û
>W131221643
AUAQ01000011
Actinomycetota
Corynebacterium freiburgense DSM 45254 [AUAQ]
445338
445413
+
Val
TAC
[ENA]
¡û
>W141042455
AMEM01000023
Actinomycetota
Corynebacterium durum F0235 [AMEM]
47306
47231
-
Val
TAC
[ENA]
¡û
>WENV180503474
OCAM01029101
[OCAM] human gut metagenome; faeces
416
343
-
Val
TAC
[ENA]
¢þ
>WENV180697577
ODDE01001545
[ODDE] human metagenome; G_DNA_Supragingival plaque
6815
6888
+
Val
TAC
[ENA]
¢þ
>WENV180731339
ODGW01000106
[ODGW] human metagenome; G_DNA_Supragingival plaque
21998
22071
+
Val
TAC
[ENA]
¢þ
>WENV180732554
ODGY01001374
[ODGY] human metagenome; G_DNA_Supragingival plaque
6828
6901
+
Val
TAC
[ENA]
¢þ
>WENV180733507
ODGZ01000135
[ODGZ] human metagenome; G_DNA_Supragingival plaque
3725
3652
-
Val
TAC
[ENA]
¢þ
>WENV180735951
ODHB01002237
[ODHB] human metagenome; G_DNA_Supragingival plaque
1799
1872
+
Val
TAC
[ENA]
¢þ
>WENV180738813
ODHD01000604
[ODHD] human metagenome; G_DNA_Supragingival plaque
264
191
-
Val
TAC
[ENA]
¢þ
>WENV180750933
ODHS01013235
[ODHS] human metagenome; G_DNA_Supragingival plaque
75
2
-
Val
TAC
[ENA]
¢þ
>WENV180754801
ODHU01001036
[ODHU] human metagenome; G_DNA_Supragingival plaque
321
248
-
Val
TAC
[ENA]
¢þ
>WENV180765465
ODIC01000002
[ODIC] human metagenome; G_DNA_R_Retroauricular crease
206844
206771
-
Val
TAC
[ENA]
¢þ
>WENV180777336
ODIL01002160
[ODIL] human metagenome; G_DNA_Supragingival plaque
268
195
-
Val
TAC
[ENA]
¢þ
>WENV180778071
ODIM01000503
[ODIM] human metagenome; G_DNA_Supragingival plaque
5958
6031
+
Val
TAC
[ENA]
¢þ
>WENV180781724
ODIP01002673
[ODIP] human metagenome; G_DNA_Supragingival plaque
4939
5012
+
Val
TAC
[ENA]
¢þ
>WENV180800956
ODJD01003561
[ODJD] human metagenome; G_DNA_Supragingival plaque
2382
2455
+
Val
TAC
[ENA]
¢þ
>WENV180804004
ODJG01000303
[ODJG] human metagenome; G_DNA_Supragingival plaque
29222
29149
-
Val
TAC
[ENA]
¢þ
>WENV180813753
ODJO01002165
[ODJO] human metagenome; G_DNA_Supragingival plaque
7862
7935
+
Val
TAC
[ENA]
¢þ
>WENV180822489
ODJT01001436
[ODJT] human metagenome; G_DNA_Supragingival plaque
3327
3254
-
Val
TAC
[ENA]
¢þ
>WENV180832317
ODKC01001117
[ODKC] human metagenome; G_DNA_Supragingival plaque
6541
6614
+
Val
TAC
[ENA]
¢þ
>WENV180834121
ODKD01003406
[ODKD] human metagenome; G_DNA_Supragingival plaque
3630
3703
+
Val
TAC
[ENA]
¢þ
>WENV180845972
ODKT01003499
[ODKT] human metagenome; G_DNA_Supragingival plaque
257
184
-
Val
TAC
[ENA]
¢þ
>WENV180878647
ODLX01002097
[ODLX] human metagenome; G_DNA_R_Retroauricular crease
2650
2723
+
Val
TAC
[ENA]
¢þ
>WENV180888254
ODMN01000312
[ODMN] human metagenome; G_DNA_Supragingival plaque
27859
27932
+
Val
TAC
[ENA]
¢þ
>WENV180891581
ODMQ01001320
[ODMQ] human metagenome; G_DNA_Supragingival plaque
3069
3142
+
Val
TAC
[ENA]
¢þ
>WENV180922295
ODTJ01002416
[ODTJ] human metagenome; G_DNA_Supragingival plaque
8519
8592
+
Val
TAC
[ENA]
¢þ
>WENV180923865
ODTK01000287
[ODTK] human metagenome; G_DNA_Supragingival plaque
20543
20616
+
Val
TAC
[ENA]
¢þ
>WENV180927310
ODTM01000195
[ODTM] human metagenome; G_DNA_Supragingival plaque
10740
10813
+
Val
TAC
[ENA]
¢þ
>WENV180933436
ODTR01000176
[ODTR] human metagenome; G_DNA_Supragingival plaque
14911
14984
+
Val
TAC
[ENA]
¢þ
>WENV180934750
ODTS01002218
[ODTS] human metagenome; G_DNA_Subgingival plaque
573
500
-
Val
TAC
[ENA]
¢þ
>WENV180937630
ODTX01000011
[ODTX] human metagenome; G_DNA_Supragingival plaque
46970
47043
+
Val
TAC
[ENA]
¢þ
>WENV180943123
ODUC01000001
[ODUC] human metagenome; G_DNA_Supragingival plaque
333022
333095
+
Val
TAC
[ENA]
¢þ
>WENV180958509
ODUL01006906
[ODUL] human metagenome; G_DNA_Supragingival plaque
186
113
-
Val
TAC
[ENA]
¢þ
>WENV180972966
ODUW01000646
[ODUW] human metagenome; G_DNA_Supragingival plaque
18458
18531
+
Val
TAC
[ENA]
¢þ
>WENV180975297
ODUY01004102
[ODUY] human metagenome; G_DNA_Supragingival plaque
143
70
-
Val
TAC
[ENA]
¢þ
>WENV180980519
ODVE01000325
[ODVE] human metagenome; G_DNA_Supragingival plaque
3351
3278
-
Val
TAC
[ENA]
¢þ
>WENV180982744
ODVF01000477
[ODVF] human metagenome; G_DNA_Supragingival plaque
260
187
-
Val
TAC
[ENA]
¢þ
>WENV180984400
ODVG01000290
[ODVG] human metagenome; G_DNA_R_Retroauricular crease
2793
2720
-
Val
TAC
[ENA]
¢þ
>WENV181003500
ODVX01014883
[ODVX] human metagenome; G_DNA_Supragingival plaque
2301
2374
+
Val
TAC
[ENA]
¢þ
>WENV181007852
ODWE01000879
[ODWE] human metagenome; G_DNA_Supragingival plaque
22399
22472
+
Val
TAC
[ENA]
¢þ
>WENV181012427
ODWK01000282
[ODWK] human metagenome; G_DNA_Supragingival plaque
20601
20674
+
Val
TAC
[ENA]
¢þ
>WENV181019571
ODWU01006412
[ODWU] human metagenome; G_DNA_Supragingival plaque
523
596
+
Val
TAC
[ENA]
¢þ
>WENV181029291
ODXF01000059
[ODXF] human metagenome; G_DNA_Supragingival plaque
19232
19305
+
Val
TAC
[ENA]
¢þ
>WENV181049432
ODYD01000183
[ODYD] human metagenome; G_DNA_Supragingival plaque
26676
26603
-
Val
TAC
[ENA]
¢þ
>WENV181064299
ODYP01018302
[ODYP] human metagenome; G_DNA_Supragingival plaque
370
297
-
Val
TAC
[ENA]
¢þ
>WENV181066138
ODYV01081719
[ODYV] human metagenome; G_DNA_Buccal mucosa
137
210
+
Val
TAC
[ENA]
¢þ
>WENV181066750
ODZI01001448
[ODZI] human metagenome; G_DNA_Supragingival plaque
6821
6894
+
Val
TAC
[ENA]
¢þ
>WENV181082197
OEAT01000035
[OEAT] human metagenome; G_DNA_Supragingival plaque
2235
2162
-
Val
TAC
[ENA]
¢þ
>WENV181083543
OEAV01010787
[OEAV] human metagenome; G_DNA_Supragingival plaque
2656
2729
+
Val
TAC
[ENA]
¢þ
>WENV181091143
OEBC01014764
[OEBC] human metagenome; G_DNA_Supragingival plaque
2301
2374
+
Val
TAC
[ENA]
¢þ
>WENV181107062
OEEI01001714
[OEEI] human metagenome; G_DNA_Supragingival plaque
7285
7358
+
Val
TAC
[ENA]
¢þ
>WENV181121611
OEFL01010448
[OEFL] human metagenome; G_DNA_Supragingival plaque
145
72
-
Val
TAC
[ENA]
¢þ
>WENV181123924
OEFQ01002645
[OEFQ] human metagenome; G_DNA_Supragingival plaque
2296
2223
-
Val
TAC
[ENA]
¢þ
>WENV181131672
OEGD01001024
[OEGD] human metagenome; G_DNA_L_Retroauricular crease
2529
2456
-
Val
TAC
[ENA]
¢þ
>WENV181137509
OEGJ01005335
[OEGJ] human metagenome; G_DNA_Supragingival plaque
3647
3720
+
Val
TAC
[ENA]
¢þ
>WENV181143211
OEHM01000250
[OEHM] human metagenome; G_DNA_Supragingival plaque
3917
3844
-
Val
TAC
[ENA]
¢þ
>WENV181146365
OEHQ01003787
[OEHQ] human metagenome; G_DNA_Supragingival plaque
2122
2049
-
Val
TAC
[ENA]
¢þ
>WENV181152219
OEIA01000415
[OEIA] human metagenome; G_DNA_Supragingival plaque
3361
3288
-
Val
TAC
[ENA]
¢þ
>WENV181156076
OEIE01002824
[OEIE] human metagenome; G_DNA_Supragingival plaque
3199
3272
+
Val
TAC
[ENA]
¢þ
>WENV181179606
OEJT01009515
[OEJT] human metagenome; G_DNA_Supragingival plaque
2301
2374
+
Val
TAC
[ENA]
¢þ
>WENV181180898
OEJU01001754
[OEJU] human metagenome; G_DNA_Supragingival plaque
2216
2143
-
Val
TAC
[ENA]
¢þ
>WENV181181712
OEJV01000099
[OEJV] human metagenome; G_DNA_Supragingival plaque
31887
31960
+
Val
TAC
[ENA]
¢þ
>WENV181810254
OGSU01009910
[OGSU] human gut metagenome; fecal sample 7 from infant 5
123
50
-
Val
TAC
[ENA]
¢þ
>WENV182628952
OJKR01000100
[OJKR] metagenome; surface
13991
14064
+
Val
TAC
[ENA]
¢þ
>WENV182636276
OJKZ01002037
[OJKZ] metagenome; surface
1136
1209
+
Val
TAC
[ENA]
¢þ
>WENV182640033
OJLB01000077
[OJLB] metagenome; surface
36926
36999
+
Val
TAC
[ENA]
¢þ
>WENV182643130
OJLS01001446
[OJLS] metagenome; surface
2462
2389
-
Val
TAC
[ENA]
¢þ
>WENV182643940
OJLW01003608
[OJLW] metagenome; surface
4022
3949
-
Val
TAC
[ENA]
¢þ
>WENV182645235
OJLY01005680
[OJLY] metagenome; surface
1136
1209
+
Val
TAC
[ENA]
¢þ
>WENV182646381
OJMA01006315
[OJMA] metagenome; surface
388
461
+
Val
TAC
[ENA]
¢þ
>WENV182671612
OJNM01000518
[OJNM] metagenome; surface
12821
12748
-
Val
TAC
[ENA]
¢þ
>WENV182803037
OJUH01000158
[OJUH] human gut metagenome; human gut
6350
6423
+
Val
TAC
[ENA]
¢þ
>WENV182820798
OKAP01000237
[OKAP] human gut metagenome; human gut
5121
5194
+
Val
TAC
[ENA]
¢þ
>WENV182835497
OKFO01000030
[OKFO] human gut metagenome; human gut
69937
70010
+
Val
TAC
[ENA]
¢þ
>WENV183511771
OMJG01003513
[OMJG] food metagenome; Cotija cheese
3923
3848
-
Val
TAC
[ENA]
¢þ
>W141452853
JFCF01000026
Actinomycetota
Corynebacterium jeikeium [JFCF]
22878
22953
+
Val
TAC
[ENA]
¡û
>W141452911
JFCG01000032
Actinomycetota
Corynebacterium jeikeium [JFCG]
47206
47281
+
Val
TAC
[ENA]
¡û
>W141452961
JFCH01000046
Actinomycetota
Corynebacterium jeikeium [JFCH]
35242
35317
+
Val
TAC
[ENA]
¡û
>W141452999
JFCI01000020
Actinomycetota
Corynebacterium jeikeium [JFCI]
183187
183112
-
Val
TAC
[ENA]
¡û
>W141453051
JFCJ01000064
Actinomycetota
Corynebacterium jeikeium [JFCJ]
49815
49740
-
Val
TAC
[ENA]
¡û
>W141453081
JFCK01000184
Actinomycetota
Corynebacterium jeikeium [JFCK]
18178
18253
+
Val
TAC
[ENA]
¡û
>W141453151
JFCL01000027
Actinomycetota
Corynebacterium jeikeium [JFCL]
32399
32324
-
Val
TAC
[ENA]
¡û
>W141453186
JFCM01000021
Actinomycetota
Corynebacterium jeikeium [JFCM]
33329
33254
-
Val
TAC
[ENA]
¡û
>W141453245
JFCN01000043
Actinomycetota
Corynebacterium jeikeium [JFCN]
1496
1421
-
Val
TAC
[ENA]
¡û
>W141453317
JFCO01000075
Actinomycetota
Corynebacterium jeikeium [JFCO]
238
163
-
Val
TAC
[ENA]
¡û
>W141453318
JFCP01000008
Actinomycetota
Corynebacterium jeikeium [JFCP]
21977
22052
+
Val
TAC
[ENA]
¡û
>W141453389
JFCQ01000016
Actinomycetota
Corynebacterium jeikeium [JFCQ]
20179
20254
+
Val
TAC
[ENA]
¡û
>W141453468
JFCR01000029
Actinomycetota
Corynebacterium jeikeium [JFCR]
60694
60619
-
Val
TAC
[ENA]
¡û
>C181110023
CP024988
Actinomycetota
Corynebacterium provencense 17KM38 [CP024988]
1957331
1957258
-
Val
TAC
-
¡û
>C181214779
LS483459
Actinomycetota
Corynebacterium jeikeium NCTC11914 [LS483459]
1881879
1881804
-
Val
TAC
-
¡û
>C191114577
CP033896
Actinomycetota
Corynebacterium choanae 200CH [CP033896]
2036076
2036003
-
Val
TAC
-
¡û
>W1910226181
FMTZ01000008
Actinomycetota
Corynebacterium jeikeium [FMTZ]
31617
31692
+
Val
TAC
[ENA]
¡û
>C09103326
CP001620
Actinomycetota
Corynebacterium kroppenstedtii DSM 44385 [CP001620]
795088
795163
+
Val
TAC
[Ensembl]
¡û
>W1911596582
PNHH01000001
Actinomycetota
Corynebacterium kroppenstedtii UMB0869 [PNHH]
274094
274167
+
Val
TAC
[ENA]
¡û
>W1911770944
QXJK01000004
Actinomycetota
Corynebacterium falsenii FN1-14 [QXJK]
40397
40470
+
Val
TAC
[ENA]
¡û
>W1810118391
PHQP01000035
Actinomycetota
Corynebacterium heidelbergense DSM 104638 [PHQP]
10183
10108
-
Val
TAC
[ENA]
¡û
>W1810233407
PPDL01000023
Actinomycetota
Corynebacterium sp. 13CS0277 [PPDL]
36135
36210
+
Val
TAC
[ENA]
¡û
>W1810623587
QHCV01000049
Actinomycetota
Corynebacterium heidelbergense 647 [QHCV]
3768
3693
-
Val
TAC
[ENA]
¡û
>C151013308
CP006842
Actinomycetota
Corynebacterium glyciniphilum AJ 3170 [CP006842]
2171148
2171073
-
Val
TAC
[Ensembl]
¡û
>C151017672
CP007156
Actinomycetota
Corynebacterium falsenii DSM 44353 BL 8171 [CP007156]
923835
923908
+
Val
TAC
[Ensembl]
¡û
>W10113797
ADGN01000072
Actinomycetota
Corynebacterium resistens DSM 45100 [ADGN]
8620
8695
+
Val
TAC
[ENA]
¡û
>C11106257
CP002857
Actinomycetota
Corynebacterium resistens DSM 45100 [CP002857]
882941
883016
+
Val
TAC
[Ensembl]
¡û
>W11117133
ADGN01000072
Actinomycetota
Corynebacterium resistens DSM 45100 [ADGN]
8620
8695
+
Val
TAC
[ENA]
¡û
>W1511357096
JRVJ01000003
Actinomycetota
Corynebacterium auriscanis CIP 106629 [JRVJ]
258302
258377
+
Val
TAC
[ENA]
¡û
>W1511438978
JUNC01000010
Actinomycetota
Corynebacterium jeikeium 931_CJEI [JUNC]
1442
1367
-
Val
TAC
[ENA]
¡û
>W1511459387
JVKJ01000001
Actinomycetota
Corynebacterium falsenii 355_CFAL [JVKJ]
264106
264181
+
Val
TAC
[ENA]
¡û
>W1511523837
JYCR01000005
Actinomycetota
Corynebacterium kroppenstedtii ITA105 [JYCR]
214936
214863
-
Val
TAC
[ENA]
¡û
>W1511523964
JYDD01000006
Actinomycetota
Corynebacterium kroppenstedtii ITA205 [JYDD]
215962
215889
-
Val
TAC
[ENA]
¡û
>W11164182
AFIZ01000047
Actinomycetota
Corynebacterium nuruki S6-4 [AFIZ]
160613
160538
-
Val
TAC
[ENA]
¡û
>W1610419445
FIZC01000018
Actinomycetota
Corynebacterium provencense SN15 [FIZC]
197772
197699
-
Val
TAC
[ENA]
¡û
>W1610907132
LSCY01000008
Actinomycetota
Corynebacterium kroppenstedtii [LSCY]
273988
274061
+
Val
TAC
[ENA]
¡û
>W1710419181
FIZC01000018
Actinomycetota
Corynebacterium provencense SN15 [FIZC]
197772
197699
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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