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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.297726 (18 seq.)
>W1711018727
LQXD01000109
Bacillota
Anaerobacillus isosaccharinicus NB2006 [LQXD]
30093
30017
-
Met
CAT
[ENA]
¡û
>W1711525556
MLQR01000004
Bacillota
Anaerobacillus alkalilacustris [MLQR]
214831
214907
+
Met
CAT
[ENA]
¡û
>W1711525618
MLQS01000001
Bacillota
Anaerobacillus alkalidiazotrophicus [MLQS]
1179107
1179183
+
Met
CAT
[ENA]
¡û
>W131169220
AREO01000006
Bacillota
Erysipelothrix tonsillarum DSM 14972 [AREO]
59889
59813
-
Met
CAT
[ENA]
¡û
>C171057473
CP017116
Bacillota
Erysipelothrix rhusiopathiae WH13013 [CP017116]
441977
441901
-
Met
CAT
-
¡û
>WENV170685233
LFRM01079843
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
343
267
-
Met
CAT
[ENA]
¢þ
>WENV170691152
LFRM01382374
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1324
1400
+
Met
CAT
[ENA]
¢þ
>WENV170717150
LSQX01025737
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
258
182
-
Met
CAT
[ENA]
¢þ
>WENV170723821
LSQX01282691
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2976
3052
+
Met
CAT
[ENA]
¢þ
>C181185415
CP029804
Bacillota
Erysipelothrix rhusiopathiae ML101 [CP029804]
1646463
1646387
-
Met
CAT
-
¡û
>C191108218
CP033601
Bacillota
Erysipelothrix rhusiopathiae KC-Sb-R1 [CP033601]
270201
270277
+
Met
CAT
-
¡û
>C191122109
CP034234
Bacillota
Erysipelothrix piscisicarius 15TAL0474 [CP034234]
158436
158360
-
Met
CAT
-
¡û
>C191211029
LR134439
Bacillota
Erysipelothrix rhusiopathiae NCTC8163 [LR134439]
296660
296736
+
Met
CAT
-
¡û
>W09128004
ACLK01000024
Bacillota
Erysipelothrix rhusiopathiae ATCC 19414 [ACLK]
25310
25386
+
Met
CAT
[ENA]
¡û
>W1911708172
QOUX01000045
Bacillota
Anaerobacillus alkaliphilus B16-10 [QOUX]
65725
65801
+
Met
CAT
[ENA]
¡û
>C151007184
CP005079
Bacillota
Erysipelothrix rhusiopathiae SY1027 [CP005079]
1099702
1099626
-
Met
CAT
[Ensembl]
¡û
>C11108877
AP012027
Bacillota
Erysipelothrix rhusiopathiae str. Fujisawa [AP012027]
1579989
1579913
-
Met
CAT
[Ensembl]
¡û
>C161078622
CP014861
Bacillota
Erysipelothrix rhusiopathiae GXBY-1 [CP014861]
286519
286595
+
Met
CAT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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