This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.29780 (6 seq.)
>WENV180041844
LLBZ010580292
[LLBZ] soil metagenome; soil from tomato rhizosphere
1
91
+
Ser
GGA
[ENA]
¡û
>WENV180295206
OBIZ01036574
[OBIZ] soil metagenome; soil
644
734
+
Ser
GGA
[ENA]
¡û
>WENV180351233
OBLQ010034864
[OBLQ] soil metagenome; soil
1162
1072
-
Ser
GGA
[ENA]
¡û
>WENV180351281
OBLQ010039801
[OBLQ] soil metagenome; soil
1429
1339
-
Ser
GGA
[ENA]
¡û
>W1910699549
MERM01000155
Betaproteobacteria
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14 [MERM]
16026
16116
+
Ser
GGA
[ENA]
¡û
>W2010832975
MERM01000155
Betaproteobacteria
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14 [MERM]
16026
16116
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK