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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.298198 (33 seq.)
>W1711947348
NBOA01000005
Alphaproteobacteria
Thioclava sp. F34-6 [NBOA]
9177
9102
-
Val
TAC
[ENA]
¡û
>C171064561
CP017622
Alphaproteobacteria
Ketogulonicigenium vulgare SPU B805 [CP017622]
1620415
1620340
-
Val
TAC
-
¡û
>C171067768
CP017781
Alphaproteobacteria
Rhodobacter sp. LPB0142 [CP017781]
1695828
1695903
+
Val
TAC
-
¡û
>C171101141
CP019937
Alphaproteobacteria
Ketogulonicigenium robustum SPU_B003 [CP019937]
998888
998963
+
Val
TAC
-
¡û
>WENV180209978
OBAL01055531
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
86
11
-
Val
TAC
[ENA]
¢þ
>WENV180394622
OBPS01028159
[OBPS] marine metagenome; ENVO:00002010 seawater
129
204
+
Val
TAC
[ENA]
¢þ
>WENV181312356
OFJB01092563
[OFJB] sludge metagenome; sludge
100
175
+
Val
TAC
[ENA]
¢þ
>WENV183731042
PJTS01004901
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
1189
1264
+
Val
TAC
[ENA]
¢þ
>WENV183732780
PJTX01013501
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
338
263
-
Val
TAC
[ENA]
¢þ
>WENV183734656
PJTZ01033014
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
257
182
-
Val
TAC
[ENA]
¢þ
>C181194183
CP030918
Alphaproteobacteria
Paracoccus suum SC2-6 [CP030918]
2505518
2505443
-
Val
TAC
-
¡û
>C141006349
CP006650
Alphaproteobacteria
Paracoccus aminophilus JCM 7686 [CP006650]
1913221
1913146
-
Val
TAC
[Ensembl]
¡û
>W1910547053
FZNM01000001
Alphaproteobacteria
Paracoccus sediminis DSM 26170 [FZNM]
438895
438970
+
Val
TAC
[ENA]
¡û
>W1910549885
FZQB01000010
Alphaproteobacteria
Paracoccus seriniphilus DSM 14827 [FZQB]
73839
73764
-
Val
TAC
[ENA]
¡û
>W1911283650
NTJD01000010
Alphaproteobacteria
Pseudothioclava arenosa CAU 1312 [NTJD]
63513
63438
-
Val
TAC
[ENA]
¡û
>W1911397896
NWMQ01000002
Alphaproteobacteria
Paracoccus sp. SY [NWMQ]
108689
108764
+
Val
TAC
[ENA]
¡û
>W1911698490
QNRC01000002
Alphaproteobacteria
Paracoccus siganidrum M26 [QNRC]
8266
8191
-
Val
TAC
[ENA]
¡û
>W1911810966
QZCG01000005
Alphaproteobacteria
Paracoccus onubensis 1011MAR3C25 [QZCG]
289050
288975
-
Val
TAC
[ENA]
¡û
>W1911813236
QZEW01000019
Alphaproteobacteria
Paracoccus siganidrum DSM 26381 [QZEW]
7900
7825
-
Val
TAC
[ENA]
¡û
>W1810235351
PPFE01000008
Alphaproteobacteria
Roseovarius confluentis SAG6 [PPFE]
104248
104323
+
Val
TAC
[ENA]
¡û
>W1810368590
PVZS01000008
Alphaproteobacteria
Alsobacter soli SH9 [PVZS]
56012
56087
+
Val
TAC
[ENA]
¡û
>W1810385253
PXNQ01000002
Alphaproteobacteria
Paracoccus methylarcula VKM B-2159 [PXNQ]
411068
410993
-
Val
TAC
[ENA]
¡û
>W1810596873
QGGW01000001
Alphaproteobacteria
Roseicyclus mahoneyensis DSM 16097 [QGGW]
788676
788601
-
Val
TAC
[ENA]
¡û
>W1810707367
QNHG01000001
Alphaproteobacteria
Pseudogemmobacter bohemicus Cd-10 [QNHG]
1392166
1392241
+
Val
TAC
[ENA]
¡û
>W1810733736
QOHR01000002
Alphaproteobacteria
Rhodosalinus sediminis WDN1C137 [QOHR]
73560
73635
+
Val
TAC
[ENA]
¡û
>C11111841
CP002018
Alphaproteobacteria
Ketogulonicigenium vulgare WSH-001 [CP002018]
1075971
1075896
-
Val
TAC
[Ensembl]
¡û
>C11111893
CP002224
Alphaproteobacteria
Ketogulonicigenium vulgare Y25 [CP002224]
1482421
1482346
-
Val
TAC
[Ensembl]
¡û
>C161047285
CP012908
Alphaproteobacteria
Ketogulonicigenium vulgare Hbe602 [CP012908]
1466352
1466277
-
Val
TAC
-
¡û
>C161100012
CP016592
Alphaproteobacteria
Ketogulonicigenium vulgare SKV [CP016592]
1466165
1466090
-
Val
TAC
-
¡û
>W1610578346
LAXJ01000012
Alphaproteobacteria
Roseovarius atlanticus [LAXJ]
109951
109876
-
Val
TAC
[ENA]
¡û
>W1710535239
FNSK01000001
Alphaproteobacteria
Rhodobacter sp. 24-YEA-8 [FNSK]
1741786
1741861
+
Val
TAC
[ENA]
¡û
>W1710570330
FOVB01000008
Alphaproteobacteria
Thioclava dalianensis [FOVB]
17954
18029
+
Val
TAC
[ENA]
¡û
>W1710697219
LAXJ01000012
Alphaproteobacteria
Roseovarius atlanticus [LAXJ]
109951
109876
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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