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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.298201 (129 seq.)
>W1711502436
MKSR01000030
Bacteroidota
Dyadobacter sp. 50-39 [MKSR]
94406
94333
-
Lys
TTT
[ENA]
¡û
>W1711502441
MKSR01000040
Bacteroidota
Dyadobacter sp. 50-39 [MKSR]
12785
12712
-
Lys
TTT
[ENA]
¡û
>W1711506289
MKWH01000006
Bacteroidota
Sphingobacterium sp. 40-24 [MKWH]
214516
214441
-
Lys
TTT
[ENA]
¡û
>W1711506311
MKWH01000034
Bacteroidota
Sphingobacterium sp. 40-24 [MKWH]
137752
137827
+
Lys
TTT
[ENA]
¡û
>W1711506326
MKWH01000048
Bacteroidota
Sphingobacterium sp. 40-24 [MKWH]
18365
18292
-
Lys
TTT
[ENA]
¡û
>W1711506339
MKWH01000064
Bacteroidota
Sphingobacterium sp. 40-24 [MKWH]
47013
46938
-
Lys
TTT
[ENA]
¡û
>W1711712737
MTCM01000001
Bacteroidota
Sphingobacterium sp. CZ-UAM [MTCM]
1509139
1509214
+
Lys
TTT
[ENA]
¡û
>W1711712742
MTCM01000001
Bacteroidota
Sphingobacterium sp. CZ-UAM [MTCM]
2254717
2254792
+
Lys
TTT
[ENA]
¡û
>W1711712753
MTCM01000001
Bacteroidota
Sphingobacterium sp. CZ-UAM [MTCM]
415646
415571
-
Lys
TTT
[ENA]
¡û
>W1711712777
MTCM01000004
Bacteroidota
Sphingobacterium sp. CZ-UAM [MTCM]
91869
91944
+
Lys
TTT
[ENA]
¡û
>W131087898
AODQ01000028
Bacteroidota
Cesiribacter andamanensis AMV16 [AODQ]
41939
41864
-
Lys
TTT
[ENA]
¡û
>W131087910
AODQ01000092
Bacteroidota
Cesiribacter andamanensis AMV16 [AODQ]
73
1
-
Lys
TTT
[ENA]
¡û
>W131179038
ARMB01000053
Bacteroidota
Rhodonellum psychrophilum DSM 17998 [ARMB]
229560
229485
-
Lys
TTT
[ENA]
¡û
>W131179041
ARMB01000053
Bacteroidota
Rhodonellum psychrophilum DSM 17998 [ARMB]
229050
228977
-
Lys
TTT
[ENA]
¡û
>W131180712
ARNI01000009
Bacteroidota
Dyadobacter beijingensis DSM 21582 [ARNI]
1189727
1189800
+
Lys
TTT
[ENA]
¡û
>W131180731
ARNI01000013
Bacteroidota
Dyadobacter beijingensis DSM 21582 [ARNI]
824
751
-
Lys
TTT
[ENA]
¡û
>W131220000
ATZA01000003
Bacteroidota
Olivibacter sitiensis DSM 17696 [ATZA]
55015
54940
-
Lys
TTT
[ENA]
¡û
>W131220001
ATZA01000003
Bacteroidota
Olivibacter sitiensis DSM 17696 [ATZA]
54013
53938
-
Lys
TTT
[ENA]
¡û
>W131223152
AUBV01000016
Bacteroidota
Algoriphagus mannitolivorans DSM 15301 [AUBV]
65072
64999
-
Lys
TTT
[ENA]
¡û
>W131223155
AUBV01000016
Bacteroidota
Algoriphagus mannitolivorans DSM 15301 [AUBV]
64607
64532
-
Lys
TTT
[ENA]
¡û
>WENV180391120
OBPM01014312
[OBPM] marine metagenome; ENVO:00002010
202
129
-
Lys
TTT
[ENA]
¢þ
>WENV181365415
OFPQ01001121
[OFPQ] sediment metagenome; Lake sediment
157
84
-
Lys
TTT
[ENA]
¢þ
>WENV181370736
OFQT01007084
[OFQT] freshwater metagenome; Freshwater Lake
73
1
-
Lys
TTT
[ENA]
¢þ
>WENV181840165
OGVO01048197
[OGVO] freshwater metagenome; freshwater
146
73
-
Lys
TTT
[ENA]
¢þ
>WENV181841277
OGVR01004467
[OGVR] freshwater metagenome; freshwater
236
163
-
Lys
TTT
[ENA]
¢þ
>WENV181841278
OGVR01004467
[OGVR] freshwater metagenome; freshwater
137
64
-
Lys
TTT
[ENA]
¢þ
>WENV181843457
OGVU01017039
[OGVU] freshwater metagenome; freshwater
100
173
+
Lys
TTT
[ENA]
¢þ
>WENV181844170
OGVV01016001
[OGVV] freshwater metagenome; freshwater
514
441
-
Lys
TTT
[ENA]
¢þ
>WENV181857522
OGWO01010519
[OGWO] freshwater metagenome; freshwater
780
853
+
Lys
TTT
[ENA]
¢þ
>WENV183727531
PJTP01000012
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
270362
270435
+
Lys
TTT
[ENA]
¢þ
>WENV183727609
PJTP01000031
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
169
96
-
Lys
TTT
[ENA]
¢þ
>WENV183727622
PJTP01000044
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
330
257
-
Lys
TTT
[ENA]
¢þ
>WENV183727734
PJTP01000127
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
5942
6015
+
Lys
TTT
[ENA]
¢þ
>WENV183728116
PJTP01037739
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
430
357
-
Lys
TTT
[ENA]
¢þ
>WENV183730104
PJTR01000731
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
4526
4453
-
Lys
TTT
[ENA]
¢þ
>WENV183730887
PJTS01001753
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
4435
4362
-
Lys
TTT
[ENA]
¢þ
>WENV183732900
PJTX01034700
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
147
73
-
Lys
TTT
[ENA]
¢þ
>WENV183732937
PJTY01000003
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
276155
276082
-
Lys
TTT
[ENA]
¢þ
>WENV183733045
PJTY01000029
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
194764
194837
+
Lys
TTT
[ENA]
¢þ
>WENV183733167
PJTY01000173
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
39665
39592
-
Lys
TTT
[ENA]
¢þ
>WENV183733965
PJTZ01000008
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
274142
274069
-
Lys
TTT
[ENA]
¢þ
>WENV183734059
PJTZ01000033
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
194764
194837
+
Lys
TTT
[ENA]
¢þ
>WENV183734178
PJTZ01000141
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
39665
39592
-
Lys
TTT
[ENA]
¢þ
>WENV183734779
PJUA01000010
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
262175
262248
+
Lys
TTT
[ENA]
¢þ
>WENV183734965
PJUA01000258
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
23646
23719
+
Lys
TTT
[ENA]
¢þ
>WENV183735000
PJUA01000364
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
330
257
-
Lys
TTT
[ENA]
¢þ
>WENV183735031
PJUA01000452
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
21254
21181
-
Lys
TTT
[ENA]
¢þ
>WENV183735122
PJUA01001114
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
6345
6418
+
Lys
TTT
[ENA]
¢þ
>WENV183735155
PJUA01001437
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
4101
4028
-
Lys
TTT
[ENA]
¢þ
>WENV183735174
PJUA01001845
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
2839
2766
-
Lys
TTT
[ENA]
¢þ
>WENV183735384
PJUA01020552
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
366
293
-
Lys
TTT
[ENA]
¢þ
>WENV183736127
PJUC01000039
[PJUC] soil metagenome; Soil enriched on filter paper
32406
32333
-
Lys
TTT
[ENA]
¢þ
>WENV183736176
PJUC01000082
[PJUC] soil metagenome; Soil enriched on filter paper
37241
37168
-
Lys
TTT
[ENA]
¢þ
>WENV183736803
PJUD01000035
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
25034
25107
+
Lys
TTT
[ENA]
¢þ
>WENV183737015
PJUD01000223
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
39057
38984
-
Lys
TTT
[ENA]
¢þ
>WENV183737025
PJUD01000248
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
15053
14980
-
Lys
TTT
[ENA]
¢þ
>WENV183738625
PJUE01000045
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
177838
177765
-
Lys
TTT
[ENA]
¢þ
>WENV183738837
PJUE01000279
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
39057
38984
-
Lys
TTT
[ENA]
¢þ
>WENV183738859
PJUE01000314
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
15053
14980
-
Lys
TTT
[ENA]
¢þ
>WENV183739980
PJUF01000107
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
85313
85240
-
Lys
TTT
[ENA]
¢þ
>WENV183740144
PJUF01000472
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
7386
7459
+
Lys
TTT
[ENA]
¢þ
>WENV183740314
PJUF01001132
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
5806
5879
+
Lys
TTT
[ENA]
¢þ
>WENV183740426
PJUF01002016
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
8917
8844
-
Lys
TTT
[ENA]
¢þ
>WENV183740581
PJUF01003711
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
1607
1680
+
Lys
TTT
[ENA]
¢þ
>WENV183743149
PJUJ01000063
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
85163
85090
-
Lys
TTT
[ENA]
¢þ
>WENV183743150
PJUJ01000063
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
51355
51282
-
Lys
TTT
[ENA]
¢þ
>WENV183743309
PJUJ01000399
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
414
341
-
Lys
TTT
[ENA]
¢þ
>WENV170606267
FUWD010638827
[FUWD] metagenome; unknown
245
172
-
Lys
TTT
[ENA]
¢þ
>WENV170713165
LNFM01025344
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1812
1737
-
Lys
TTT
[ENA]
¢þ
>WENV170994540
MWWE01004541
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
2237
2310
+
Lys
TTT
[ENA]
¢þ
>WENV170994698
MWWE01032158
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
74
147
+
Lys
TTT
[ENA]
¢þ
>WENV170995146
MWWE01183732
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
162
237
+
Lys
TTT
[ENA]
¢þ
>WENV170996348
MWWF01229815
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
164
237
+
Lys
TTT
[ENA]
¢þ
>C181177192
CP029346
Bacteroidota
Aquirufa nivalisilvae HME7025 [CP029346]
1815320
1815247
-
Lys
TTT
-
¡û
>C191088394
CP032382
Bacteroidota
Chryseolinea soli KIS68-18 [CP032382]
3079631
3079704
+
Lys
TTT
-
¡û
>C191157527
CP038029
Bacteroidota
Sphingobacterium psychroaquaticum SJ-25 [CP038029]
2563833
2563906
+
Lys
TTT
-
¡û
>C191157545
CP038029
Bacteroidota
Sphingobacterium psychroaquaticum SJ-25 [CP038029]
2941145
2941072
-
Lys
TTT
-
¡û
>C191158022
CP038159
Bacteroidota
Sphingobacterium sp. CZ-2 [CP038159]
947657
947730
+
Lys
TTT
-
¡û
>C191158048
CP038159
Bacteroidota
Sphingobacterium sp. CZ-2 [CP038159]
2916514
2916441
-
Lys
TTT
-
¡û
>C191222273
LR590484
Bacteroidota
Sphingobacterium thalpophilum NCTC11429 [LR590484]
649626
649699
+
Lys
TTT
-
¡û
>C191222316
LR590484
Bacteroidota
Sphingobacterium thalpophilum NCTC11429 [LR590484]
5681665
5681738
+
Lys
TTT
-
¡û
>C191222324
LR590484
Bacteroidota
Sphingobacterium thalpophilum NCTC11429 [LR590484]
4660328
4660255
-
Lys
TTT
-
¡û
>C191222325
LR590484
Bacteroidota
Sphingobacterium thalpophilum NCTC11429 [LR590484]
4130284
4130211
-
Lys
TTT
-
¡û
>W09108946
ABTS01000003
Bacteroidota
Dyadobacter fermentans DSM 18053 [ABTS]
37681
37754
+
Lys
TTT
[ENA]
¡û
>W09108949
ABTS01000005
Bacteroidota
Dyadobacter fermentans DSM 18053 [ABTS]
18420
18493
+
Lys
TTT
[ENA]
¡û
>W141701934
JMLD01000001
Bacteroidota
Sphingobacterium thalpophilum DSM 11723 [JMLD]
401228
401303
+
Lys
TTT
[ENA]
¡û
>W141701957
JMLD01000009
Bacteroidota
Sphingobacterium thalpophilum DSM 11723 [JMLD]
49619
49546
-
Lys
TTT
[ENA]
¡û
>W141701991
JMLD01000021
Bacteroidota
Sphingobacterium thalpophilum DSM 11723 [JMLD]
39029
38954
-
Lys
TTT
[ENA]
¡û
>W1910378063
FUKX01000030
Bacteroidota
Sphingobacterium faecium PCAi_F2.5 [FUKX]
114
41
-
Lys
TTT
[ENA]
¡û
>W1910378083
FUKX01000041
Bacteroidota
Sphingobacterium faecium PCAi_F2.5 [FUKX]
108899
108972
+
Lys
TTT
[ENA]
¡û
>W1910378101
FUKX01000060
Bacteroidota
Sphingobacterium faecium PCAi_F2.5 [FUKX]
48221
48148
-
Lys
TTT
[ENA]
¡û
>W1910378102
FUKX01000060
Bacteroidota
Sphingobacterium faecium PCAi_F2.5 [FUKX]
23500
23427
-
Lys
TTT
[ENA]
¡û
>W1910378103
FUKX01000060
Bacteroidota
Sphingobacterium faecium PCAi_F2.5 [FUKX]
8019
7946
-
Lys
TTT
[ENA]
¡û
>W1910547402
FZNS01000004
Bacteroidota
Hymenobacter mucosus DSM 28041 [FZNS]
385298
385225
-
Lys
TTT
[ENA]
¡û
>W1910547403
FZNS01000004
Bacteroidota
Hymenobacter mucosus DSM 28041 [FZNS]
384335
384262
-
Lys
TTT
[ENA]
¡û
>W1910664342
MCAQ01000001
Bacteroidota
Sphingobacterium siyangense T12B17 [MCAQ]
523937
523864
-
Lys
TTT
[ENA]
¡û
>W1910664350
MCAQ01000003
Bacteroidota
Sphingobacterium siyangense T12B17 [MCAQ]
287754
287681
-
Lys
TTT
[ENA]
¡û
>W1910664369
MCAQ01000012
Bacteroidota
Sphingobacterium siyangense T12B17 [MCAQ]
463936
463863
-
Lys
TTT
[ENA]
¡û
>W1910664374
MCAQ01000023
Bacteroidota
Sphingobacterium siyangense T12B17 [MCAQ]
219441
219514
+
Lys
TTT
[ENA]
¡û
>W1911749377
QWGE01000006
Bacteroidota
Pontibacter oryzae KIRAN [QWGE]
114012
114085
+
Lys
TTT
[ENA]
¡û
>W1911749378
QWGE01000006
Bacteroidota
Pontibacter oryzae KIRAN [QWGE]
114218
114291
+
Lys
TTT
[ENA]
¡û
>SRA1001969
SRR001308.155375
Metagenomic characterization of a wastewater treatment plant (SRP000180)
109
182
+
Lys
TTT
[SRA]
>W1810069045
PEAZ01000085
Bacteroidota
Sphingobacterium sp. 1.A.4 [PEAZ]
105542
105469
-
Lys
TTT
[ENA]
¡û
>W1810069057
PEAZ01000118
Bacteroidota
Sphingobacterium sp. 1.A.4 [PEAZ]
111322
111395
+
Lys
TTT
[ENA]
¡û
>SRA1002161
SRR001308.276784
Metagenomic characterization of a wastewater treatment plant (SRP000180)
4
77
+
Lys
TTT
[SRA]
>SRA1003308
SRR002326.380502
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
113
40
-
Lys
TTT
[SRA]
>W1810195650
PKRS01000007
Bacteroidota
Emticicia sp. TH156 [PKRS]
2078
2005
-
Lys
TTT
[ENA]
¡û
>W1810195651
PKRS01000007
Bacteroidota
Emticicia sp. TH156 [PKRS]
1964
1891
-
Lys
TTT
[ENA]
¡û
>W1810913040
QVMT01000010
Bacteroidota
Emticicia sp. C21 [QVMT]
73929
74002
+
Lys
TTT
[ENA]
¡û
>W1810913042
QVMT01000010
Bacteroidota
Emticicia sp. C21 [QVMT]
74175
74248
+
Lys
TTT
[ENA]
¡û
>C151071869
CP010777
Bacteroidota
Rufibacter radiotolerans DG31D [CP010777]
841839
841912
+
Lys
TTT
[Ensembl]
¡û
>C151071870
CP010777
Bacteroidota
Rufibacter radiotolerans DG31D [CP010777]
841979
842052
+
Lys
TTT
[Ensembl]
¡û
>C11121217
CP002584
Bacteroidota
Sphingobacterium sp. 21 [CP002584]
4355877
4355952
+
Lys
TTT
[Ensembl]
¡û
>C11121218
CP002584
Bacteroidota
Sphingobacterium sp. 21 [CP002584]
4414684
4414759
+
Lys
TTT
[Ensembl]
¡û
>W1511499244
JXAC01000078
Bacteroidota
Sphingobacterium sp. T2 [JXAC]
9159
9234
+
Lys
TTT
[ENA]
¡û
>W1511499254
JXAC01000119
Bacteroidota
Sphingobacterium sp. T2 [JXAC]
6444
6369
-
Lys
TTT
[ENA]
¡û
>C161046196
CP012836
Bacteroidota
Algoriphagus sanaruensis M8-2 [CP012836]
93466
93391
-
Lys
TTT
[Ensembl]
¡û
>C161046199
CP012836
Bacteroidota
Algoriphagus sanaruensis M8-2 [CP012836]
93033
92958
-
Lys
TTT
[Ensembl]
¡û
>W1710538680
FNUT01000002
Bacteroidota
Sphingobacterium lactis [FNUT]
406533
406608
+
Lys
TTT
[ENA]
¡û
>W1710538688
FNUT01000005
Bacteroidota
Sphingobacterium lactis [FNUT]
92138
92065
-
Lys
TTT
[ENA]
¡û
>W1710543127
FNZR01000003
Bacteroidota
Parapedobacter koreensis [FNZR]
323353
323278
-
Lys
TTT
[ENA]
¡û
>W1710562180
FOOT01000017
Bacteroidota
Pontibacter chinhatensis [FOOT]
28140
28215
+
Lys
TTT
[ENA]
¡û
>W1710562181
FOOT01000017
Bacteroidota
Pontibacter chinhatensis [FOOT]
28355
28428
+
Lys
TTT
[ENA]
¡û
>W1710576363
FOZZ01000002
Bacteroidota
Sphingobacterium wenxiniae [FOZZ]
374635
374708
+
Lys
TTT
[ENA]
¡û
>W1710576371
FOZZ01000002
Bacteroidota
Sphingobacterium wenxiniae [FOZZ]
262230
262155
-
Lys
TTT
[ENA]
¡û
>W1710585804
FQWQ01000001
Bacteroidota
Chryseolinea serpens [FQWQ]
2604301
2604226
-
Lys
TTT
[ENA]
¡û
>W1710603629
FUZF01000003
Bacteroidota
Sphingobacterium nematocida [FUZF]
40775
40700
-
Lys
TTT
[ENA]
¡û
>W1710603630
FUZF01000003
Bacteroidota
Sphingobacterium nematocida [FUZF]
35544
35469
-
Lys
TTT
[ENA]
¡û
>W1710603645
FUZF01000011
Bacteroidota
Sphingobacterium nematocida [FUZF]
106870
106945
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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