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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.298415 (60 seq.)
>W1710865788
LMGY01000012
Gammaproteobacteria
Pseudoxanthomonas sp. Root630 [LMGY]
911327
911402
+
Gln
TTG
[ENA]
¡û
>W131231895
AUIV01000004
Gammaproteobacteria
Thermomonas fusca DSM 15424 [AUIV]
63683
63758
+
Gln
TTG
[ENA]
¡û
>W1711386681
MEFQ01000091
Gammaproteobacteria
Xanthomonadaceae bacterium SCN 69-48 [MEFQ]
12117
12192
+
Gln
TTG
[ENA]
¡û
>W1711386682
MEFQ01000093
Gammaproteobacteria
Xanthomonadaceae bacterium SCN 69-48 [MEFQ]
7957
8032
+
Gln
TTG
[ENA]
¡û
>WENV180298528
OBJA01397329
[OBJA] soil metagenome; sediment, water from around vicinity
8
83
+
Gln
TTG
[ENA]
¡û
>WENV181221731
OFCY01000001
[OFCY] metagenome; soil
58984
58909
-
Gln
TTG
[ENA]
¡û
>WENV181221850
OFCZ01000073
[OFCZ] metagenome; soil
9406
9481
+
Gln
TTG
[ENA]
¡û
>WENV181222432
OFDB01000020
[OFDB] metagenome; soil
8532
8607
+
Gln
TTG
[ENA]
¡û
>W141149634
AWZR01000013
Gammaproteobacteria
Luteimonas sp. J29 [AWZR]
108482
108557
+
Gln
TTG
[ENA]
¡û
>WENV181732490
OGQD01044531
[OGQD] human gut metagenome; faeces
707
632
-
Gln
TTG
[ENA]
¡û
>WENV170012381
APMI01166116
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1508
1433
-
Gln
TTG
[ENA]
¡û
>WENV170574207
FLYM01013801
[FLYM] hot springs metagenome; Sediment
690
615
-
Gln
TTG
[ENA]
¡û
>WENV170681041
LFEF01045967
[LFEF] freshwater metagenome; waterbloom
138
213
+
Gln
TTG
[ENA]
¡û
>WENV170966064
MTEX01000612
[MTEX] soil metagenome; soil biostimulated with molasses as carbon source
4288
4363
+
Gln
TTG
[ENA]
¡û
>W1911162522
NPZB01000002
Gammaproteobacteria
Lysobacter sp. AM20-91 [NPZB]
276996
277071
+
Gln
TTG
[ENA]
¡û
>W1810195858
PKSO01000002
Gammaproteobacteria
Pseudoxanthomonas sp. KAs_5_3 [PKSO]
261556
261631
+
Gln
TTG
[ENA]
¡û
>W1810692784
QLKV01000004
Gammaproteobacteria
Thermomonas haemolytica HAMBI_2467 [QLKV]
132327
132402
+
Gln
TTG
[ENA]
¡û
>W2010703181
JACHHX010000022
Gammaproteobacteria
Rehaibacterium terrae DSM 25897 [JACHHX]
37609
37684
+
Gln
TTG
[ENA]
¡û
>W2010718026
JACHYM010000001
Gammaproteobacteria
Pseudoxanthomonas sp. OG2 [JACHYM]
1182163
1182088
-
Gln
TTG
[ENA]
¡û
>W2010910292
MSZW01000001
Gammaproteobacteria
Thermomonas haemolytica LMG 19653 [MSZW]
27396
27471
+
Gln
TTG
[ENA]
¡û
>W2011028695
NPZB01000002
Gammaproteobacteria
Lysobacter sp. AM20-91 [NPZB]
276996
277071
+
Gln
TTG
[ENA]
¡û
>W2011187907
PDWW01000022
Gammaproteobacteria
Pseudoxanthomonas japonensis DSM 17109 [PDWW]
4234
4159
-
Gln
TTG
[ENA]
¡û
>W2011538070
SCMS01000010
Gammaproteobacteria
Xanthomonadaceae bacterium 2PA [SCMS]
77525
77450
-
Gln
TTG
[ENA]
¡û
>W2011538108
SCMT01000007
Gammaproteobacteria
Xanthomonadaceae bacterium 2PB [SCMT]
45895
45970
+
Gln
TTG
[ENA]
¡û
>W2011617226
SKFB01000012
Gammaproteobacteria
Lysobacter sp. N42 [SKFB]
1309
1384
+
Gln
TTG
[ENA]
¡û
>W2011627676
SMAP01000005
Gammaproteobacteria
Thermomonas haemolytica DSM 13605 [SMAP]
132365
132440
+
Gln
TTG
[ENA]
¡û
>W2011640413
SMTF01000015
Gammaproteobacteria
Luteimonas aestuarii B9 [SMTF]
83654
83729
+
Gln
TTG
[ENA]
¡û
>W2011679808
SROY01000005
Gammaproteobacteria
Thermomonas fusca SHC 3-19 [SROY]
4260
4185
-
Gln
TTG
[ENA]
¡û
>W2012015091
VFID01000014
Gammaproteobacteria
Pseudoxanthomonas sp. z9 [VFID]
144040
144115
+
Gln
TTG
[ENA]
¡û
>W2012021199
VFPB01000005
Gammaproteobacteria
Pseudoxanthomonas sp. 3HH-4 [VFPB]
451344
451419
+
Gln
TTG
[ENA]
¡û
>W2012080262
VLJO01000046
Gammaproteobacteria
Luteimonas sp. J16 [VLJO]
12840
12915
+
Gln
TTG
[ENA]
¡û
>W2012103015
VOHE01000001
Gammaproteobacteria
Luteimonas sp. YD-1 [VOHE]
449201
449126
-
Gln
TTG
[ENA]
¡û
>W2012103128
VOHK01000004
Gammaproteobacteria
Luteimonas marina FR1330 [VOHK]
113383
113308
-
Gln
TTG
[ENA]
¡û
>W2012139452
VTFT01000003
Gammaproteobacteria
Luteimonas sp. XBU10 [VTFT]
256255
256330
+
Gln
TTG
[ENA]
¡û
>W2110048762
BMYD01000007
Gammaproteobacteria
Lysobacter bugurensis KCTC 23077 [BMYD]
4334
4259
-
Gln
TTG
[ENA]
¡û
>W2110050435
BMZL01000002
Gammaproteobacteria
Thermomonas carbonis KCTC 42013 [BMZL]
543231
543156
-
Gln
TTG
[ENA]
¡û
>W2110068463
BOUK01000001
Gammaproteobacteria
Pseudoxanthomonas japonensis TUM 20250 [BOUK]
245733
245658
-
Gln
TTG
[ENA]
¡û
>W2110267400
JACVAG010000002
Gammaproteobacteria
Pseudoxanthomonas sp. PXM04 [JACVAG]
4543
4468
-
Gln
TTG
[ENA]
¡û
>W2110267460
JACVAJ010000002
Gammaproteobacteria
Pseudoxanthomonas sp. PXM01 [JACVAJ]
547119
547044
-
Gln
TTG
[ENA]
¡û
>W2110267484
JACVAK010000001
Gammaproteobacteria
Pseudoxanthomonas sp. PXM02 [JACVAK]
1063986
1063911
-
Gln
TTG
[ENA]
¡û
>W2110319334
JADHDV010000013
Gammaproteobacteria
Pseudoxanthomonas beigongshangi REN9 [JADHDV]
124497
124572
+
Gln
TTG
[ENA]
¡û
>W2110454115
JAETWA010000016
Gammaproteobacteria
Luteimonas sp. SJ-9 [JAETWA]
5762
5687
-
Gln
TTG
[ENA]
¡û
>W2110561105
JAGKTC010000002
Gammaproteobacteria
Pseudoxanthomonas helianthi 110414 [JAGKTC]
454563
454638
+
Gln
TTG
[ENA]
¡û
>W2110649536
JAHUWP010000001
Gammaproteobacteria
Pseudoxanthomonas sp. PXM05 [JAHUWP]
1680100
1680175
+
Gln
TTG
[ENA]
¡û
>W2110692707
JAIQDJ010000001
Gammaproteobacteria
Thermomonas sp. RSS23 [JAIQDJ]
509257
509332
+
Gln
TTG
[ENA]
¡û
>C211127617
CP060028
Gammaproteobacteria
Pseudoxanthomonas mexicana GTZY [CP060028]
3830547
3830622
+
Gln
TTG
-
¡û
>C211137378
CP060711
Gammaproteobacteria
Thermomonas brevis KACC 16975 [CP060711]
2595297
2595372
+
Gln
TTG
-
¡û
>C211137742
CP060719
Gammaproteobacteria
Thermomonas carbonis KCTC 42013 [CP060719]
1983633
1983708
+
Gln
TTG
-
¡û
>C211147955
CP061497
Gammaproteobacteria
Thermomonas sp. XSG [CP061497]
876130
876055
-
Gln
TTG
-
¡û
>C211292457
CP071518
Gammaproteobacteria
Lysobacter solisilvae R19 [CP071518]
1905360
1905435
+
Gln
TTG
-
¡û
>C211402315
CP083441
Gammaproteobacteria
Pseudoxanthomonas japonensis XL7 [CP083441]
2760710
2760635
-
Gln
TTG
-
¡û
>C231358544
CP095184
Gammaproteobacteria
Pseudoxanthomonas mexicana F12 [CP095184]
2846538
2846613
+
Gln
TTG
-
¡û
>C231358672
CP095186
Gammaproteobacteria
Pseudoxanthomonas mexicana F31 [CP095186]
1353482
1353407
-
Gln
TTG
-
¡û
>C231358713
CP095187
Gammaproteobacteria
Pseudoxanthomonas sp. F37 [CP095187]
2930112
2930037
-
Gln
TTG
-
¡û
>C231551853
CP113783
Gammaproteobacteria
Pseudoxanthomonas sp. SE1 [CP113783]
3150134
3150059
-
Gln
TTG
-
¡û
>C231572214
CP116007
Gammaproteobacteria
Pseudoxanthomonas mexicana DMF-5 [CP116007]
329410
329335
-
Gln
TTG
-
¡û
>C241138389
CP049872
Gammaproteobacteria
Thermomonas sp. HDW16 [CP049872]
2408347
2408272
-
Gln
TTG
-
¡û
>W1610728134
LMGY01000012
Gammaproteobacteria
Pseudoxanthomonas sp. Root630 [LMGY]
911327
911402
+
Gln
TTG
[ENA]
¡û
>W1710527383
FNKZ01000001
Gammaproteobacteria
Pseudoxanthomonas sp. CF385 [FNKZ]
1288378
1288453
+
Gln
TTG
[ENA]
¡û
>W1710579399
FPCI01000001
Gammaproteobacteria
Pseudoxanthomonas sp. YR558 [FPCI]
1209176
1209101
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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