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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.29853 (51 seq.)
>W1710855744
LLYZ01000020
Bacteroidota
Chryseobacterium aquaticum [LLYZ]
101331
101242
-
Ser
GGA
[ENA]
¡û
>W1710857457
LMAH01000004
Bacteroidota
Chryseobacterium sp. JAH [LMAH]
140709
140798
+
Ser
GGA
[ENA]
¡û
>W1710857542
LMAI01000010
Bacteroidota
Chryseobacterium aquaticum greenlandense [LMAI]
248104
248015
-
Ser
GGA
[ENA]
¡û
>W1710876623
LMPJ01000010
Bacteroidota
Chryseobacterium sp. Leaf180 [LMPJ]
338570
338659
+
Ser
GGA
[ENA]
¡û
>W1710877675
LMQH01000011
Bacteroidota
Chryseobacterium sp. Leaf394 [LMQH]
99713
99626
-
Ser
GGA
[ENA]
¡û
>W1710877884
LMQM01000012
Bacteroidota
Chryseobacterium sp. Leaf404 [LMQM]
457775
457862
+
Ser
GGA
[ENA]
¡û
>W1710877944
LMQN01000012
Bacteroidota
Chryseobacterium sp. Leaf405 [LMQN]
279588
279499
-
Ser
GGA
[ENA]
¡û
>W1711314236
MAUH01000001
Bacteroidota
Chryseobacterium sp. CBo1 [MAUH]
416110
416021
-
Ser
GGA
[ENA]
¡û
>W1711487708
MKGI01000073
Bacteroidota
Cloacibacterium normanense [MKGI]
43821
43910
+
Ser
GGA
[ENA]
¡û
>W131237035
AUMU01000007
Bacteroidota
Chryseobacterium gregarium DSM 19109 [AUMU]
45771
45860
+
Ser
GGA
[ENA]
¡û
>WENV183734983
PJUA01000321
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
32739
32826
+
Ser
GGA
[ENA]
¢þ
>C191099954
CP033070
Bacteroidota
Chryseobacterium sp. 3008163 [CP033070]
3371832
3371745
-
Ser
GGA
-
¡û
>C191116064
CP033928
Bacteroidota
Chryseobacterium indoltheticum G0211 [CP033928]
1795275
1795362
+
Ser
GGA
-
¡û
>C191116175
CP033929
Bacteroidota
Chryseobacterium indoltheticum ATCC 27950 [CP033929]
1228038
1227951
-
Ser
GGA
-
¡û
>C191120407
CP034157
Bacteroidota
Cloacibacterium normanense NRS-1 [CP034157]
445070
444983
-
Ser
GGA
-
¡û
>W141809595
JPRP01000001
Bacteroidota
Chryseobacterium formosense [JPRP]
1153313
1153224
-
Ser
GGA
[ENA]
¡û
>W141816651
JQKA01000011
Bacteroidota
Chryseobacterium sp. OV259 [JQKA]
89075
88986
-
Ser
GGA
[ENA]
¡û
>W1910808697
MUGO01000013
Bacteroidota
Chryseobacterium piscicola DSM 21068 [MUGO]
123192
123279
+
Ser
GGA
[ENA]
¡û
>W1911647526
QAJO01000002
Bacteroidota
Chryseobacterium sp. KBW03 [QAJO]
145658
145745
+
Ser
GGA
[ENA]
¡û
>W1911701827
QNVT01000026
Bacteroidota
Chryseobacterium pennae 1_F178 [QNVT]
91271
91358
+
Ser
GGA
[ENA]
¡û
>W1911708521
QOVY01000005
Bacteroidota
Chryseobacterium sp. SC28 [QOVY]
83310
83223
-
Ser
GGA
[ENA]
¡û
>W1911749756
QWIU01000002
Bacteroidota
Chryseobacterium nematophagum JUb129 [QWIU]
3614024
3614111
+
Ser
GGA
[ENA]
¡û
>W1810234227
PPEG02000006
Bacteroidota
Chryseobacterium viscerum 687B-08 [PPEG]
146591
146678
+
Ser
GGA
[ENA]
¡û
>W1511432318
JUGK01000017
Bacteroidota
Chryseobacterium sp. YR005 [JUGK]
102305
102394
+
Ser
GGA
[ENA]
¡û
>W1511432944
JUGW01000011
Bacteroidota
Chryseobacterium sp. CF356 [JUGW]
67234
67145
-
Ser
GGA
[ENA]
¡û
>W1511489574
JWTA01000014
Bacteroidota
Chryseobacterium taiwanense TPW19 [JWTA]
156879
156790
-
Ser
GGA
[ENA]
¡û
>W11141061
AENH01000027
Bacteroidota
Riemerella anatipestifer RA-YM [AENH]
95434
95521
+
Ser
GGA
[ENA]
¡û
>W1511699505
LGIP01000019
Bacteroidota
Chryseobacterium sp. Hurlbut01 [LGIP]
359665
359754
+
Ser
GGA
[ENA]
¡û
>C161084422
CP015199
Bacteroidota
Chryseobacterium glaciei IHBB 10212 [CP015199]
941336
941425
+
Ser
GGA
[Ensembl]
¡û
>W1610596817
LELA01000043
Bacteroidota
Chryseobacterium sp. BGARF1 [LELA]
48374
48463
+
Ser
GGA
[ENA]
¡û
>W1610597219
LFEG01000077
Bacteroidota
Chryseobacterium sp. MOF25P [LFEG]
56536
56447
-
Ser
GGA
[ENA]
¡û
>W1610634207
LIRF01000006
Bacteroidota
Chryseobacterium sp. ERMR1:04 [LIRF]
59672
59583
-
Ser
GGA
[ENA]
¡û
>W1610718125
LLYZ01000020
Bacteroidota
Chryseobacterium aquaticum [LLYZ]
101331
101242
-
Ser
GGA
[ENA]
¡û
>W1610719838
LMAH01000004
Bacteroidota
Chryseobacterium sp. JAH [LMAH]
140709
140798
+
Ser
GGA
[ENA]
¡û
>W1610719923
LMAI01000010
Bacteroidota
Chryseobacterium aquaticum greenlandense [LMAI]
248104
248015
-
Ser
GGA
[ENA]
¡û
>W1610738969
LMPJ01000010
Bacteroidota
Chryseobacterium sp. Leaf180 [LMPJ]
338570
338659
+
Ser
GGA
[ENA]
¡û
>W1610740021
LMQH01000011
Bacteroidota
Chryseobacterium sp. Leaf394 [LMQH]
99713
99626
-
Ser
GGA
[ENA]
¡û
>W1610740230
LMQM01000012
Bacteroidota
Chryseobacterium sp. Leaf404 [LMQM]
457775
457862
+
Ser
GGA
[ENA]
¡û
>W1610740290
LMQN01000012
Bacteroidota
Chryseobacterium sp. Leaf405 [LMQN]
279588
279499
-
Ser
GGA
[ENA]
¡û
>W1611059111
MAUH01000001
Bacteroidota
Chryseobacterium sp. CBo1 [MAUH]
416110
416021
-
Ser
GGA
[ENA]
¡û
>W1630017955
LUDG01000001
Bacteroidota
Riemerella anatipestifer [LUDG]
453183
453270
+
Ser
GGA
[ENA]
¡û
>W1730021251
LUDG01000001
Bacteroidota
Riemerella anatipestifer [LUDG]
453183
453270
+
Ser
GGA
[ENA]
¡û
>W1710525014
FNJE01000019
Bacteroidota
Cloacibacterium normanense [FNJE]
44094
44183
+
Ser
GGA
[ENA]
¡û
>W1710577123
FPAP01000002
Bacteroidota
Chryseobacterium formosense [FPAP]
919795
919706
-
Ser
GGA
[ENA]
¡û
>W1710590220
FRAV01000004
Bacteroidota
Chryseobacterium polytrichastri [FRAV]
190774
190863
+
Ser
GGA
[ENA]
¡û
>W1710595903
FTMF01000016
Bacteroidota
Chryseobacterium indoltheticum [FTMF]
28336
28425
+
Ser
GGA
[ENA]
¡û
>W1710598954
FTOJ01000005
Bacteroidota
Chryseobacterium piscicola [FTOJ]
151872
151783
-
Ser
GGA
[ENA]
¡û
>W1710606328
FWXS01000007
Bacteroidota
Moheibacter sediminis [FWXS]
69956
70045
+
Ser
GGA
[ENA]
¡û
>W1710717822
LELA01000043
Bacteroidota
Chryseobacterium sp. BGARF1 [LELA]
48374
48463
+
Ser
GGA
[ENA]
¡û
>W1710718543
LFEG01000077
Bacteroidota
Chryseobacterium sp. MOF25P [LFEG]
56536
56447
-
Ser
GGA
[ENA]
¡û
>W1710768584
LIRF01000006
Bacteroidota
Chryseobacterium sp. ERMR1:04 [LIRF]
59672
59583
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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