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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.298530 (24 seq.)
>C08000237
CP000361
Campylobacterota
Aliarcobacter butzleri RM4018 [CP000361]
169522
169598
+
His
GTG
[Ensembl]
¡û
>WENV170657956
JTFP01037463
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
662
586
-
His
GTG
[ENA]
¢þ
>C181225234
LT906455
Campylobacterota
Aliarcobacter butzleri NCTC 12481 [LT906455]
169520
169596
+
His
GTG
-
¡û
>C191084409
CP032097
Campylobacterota
Arcobacter ellisii LMG 26155 [CP032097]
236567
236643
+
His
GTG
-
¡û
>C191178261
CP040507
Campylobacterota
Aliarcobacter butzleri JV22 [CP040507]
188051
188127
+
His
GTG
-
¡û
>C141005615
CP006615
Campylobacterota
Aliarcobacter butzleri 7h1h [CP006615]
175028
175104
+
His
GTG
[Ensembl]
¡û
>W1910810911
MUXF01000006
Campylobacterota
Arcobacter lacus RW43-9 [MUXF]
1506
1430
-
His
GTG
[ENA]
¡û
>W1911426307
NXIG01000001
Campylobacterota
Arcobacter ellisii CECT 7837 [NXIG]
319118
319194
+
His
GTG
[ENA]
¡û
>W1911426392
NXIH01000020
Campylobacterota
Arcobacter defluvii CECT 7697 [NXIH]
43743
43819
+
His
GTG
[ENA]
¡û
>W1911746028
QVQX01000003
Campylobacterota
Aliarcobacter butzleri 17-1168 [QVQX]
216260
216336
+
His
GTG
[ENA]
¡û
>W1911775167
QXMK01000004
Campylobacterota
Aliarcobacter butzleri 55 [QXMK]
879
803
-
His
GTG
[ENA]
¡û
>W1911775356
QXNB01000002
Campylobacterota
Aliarcobacter butzleri 6V [QXNB]
633
557
-
His
GTG
[ENA]
¡û
>C11100358
AP012047
Campylobacterota
Aliarcobacter butzleri ED-1 [AP012047]
160656
160732
+
His
GTG
[Ensembl]
¡û
>C11101032
AP012048
Campylobacterota
Arcobacter sp. L [AP012048]
263934
264010
+
His
GTG
[Ensembl]
¡û
>W1510762832
JAIQ01000055
Campylobacterota
Aliarcobacter butzleri L348 [JAIQ]
16780
16856
+
His
GTG
[ENA]
¡û
>W1510762851
JAIR01000005
Campylobacterota
Aliarcobacter butzleri L349 [JAIR]
341
265
-
His
GTG
[ENA]
¡û
>W1510762886
JAIS01000008
Campylobacterota
Aliarcobacter butzleri L351 [JAIS]
340
264
-
His
GTG
[ENA]
¡û
>W1510762921
JAIT01000008
Campylobacterota
Aliarcobacter butzleri L352 [JAIT]
338
262
-
His
GTG
[ENA]
¡û
>W1510762951
JAIU01000006
Campylobacterota
Aliarcobacter butzleri L353 [JAIU]
291
215
-
His
GTG
[ENA]
¡û
>W1510762987
JAIV01000040
Campylobacterota
Aliarcobacter butzleri L354 [JAIV]
117
41
-
His
GTG
[ENA]
¡û
>W1510763007
JAIW01000009
Campylobacterota
Aliarcobacter butzleri L355 [JAIW]
4037
3961
-
His
GTG
[ENA]
¡û
>W1510763046
JAIX01000008
Campylobacterota
Aliarcobacter butzleri L350 [JAIX]
151228
151304
+
His
GTG
[ENA]
¡û
>W11143277
AEPT01000007
Campylobacterota
Aliarcobacter butzleri JV22 [AEPT]
18770
18846
+
His
GTG
[ENA]
¡û
>W11167747
AFNL01000002
Campylobacterota
Aliarcobacter butzleri 7h1h [AFNL]
175
99
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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