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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.298606 (77 seq.)
>W1710865149
LMGL01000001
Actinomycetota
Microbacterium sp. Root166 [LMGL]
211451
211377
-
Met
CAT
[ENA]
¡û
>W1710870048
LMKF01000001
Actinomycetota
Microbacterium sp. Leaf203 [LMKF]
40603
40529
-
Met
CAT
[ENA]
¡û
>W1710875804
LMOR01000003
Actinomycetota
Microbacterium sp. Leaf151 [LMOR]
155686
155762
+
Met
CAT
[ENA]
¡û
>W1710876511
LMPH01000002
Actinomycetota
Microbacterium sp. Leaf179 [LMPH]
606871
606795
-
Met
CAT
[ENA]
¡û
>W1710878596
LMRB01000004
Actinomycetota
Microbacterium sp. Leaf436 [LMRB]
401495
401421
-
Met
CAT
[ENA]
¡û
>W1710909117
LNQG01000009
Actinomycetota
Microbacterium enclense [LNQG]
297508
297434
-
Met
CAT
[ENA]
¡û
>W1711009267
LQQP01000001
Actinomycetota
Microbacterium sp. T32 [LQQP]
127711
127787
+
Met
CAT
[ENA]
¡û
>W1711022915
LRAD01000026
Actinomycetota
Microbacterium laevaniformans [LRAD]
77838
77914
+
Met
CAT
[ENA]
¡û
>W1711061121
LRYC01000057
Actinomycetota
Microbacterium hominis [LRYC]
24282
24358
+
Met
CAT
[ENA]
¡û
>W1711082417
LSTV01000003
Actinomycetota
Microbacterium oleivorans [LSTV]
23251
23325
+
Met
CAT
[ENA]
¡û
>W1711385493
MEEH01000005
Actinomycetota
Microbacterium sp. SCN 71-17 [MEEH]
12175
12101
-
Met
CAT
[ENA]
¡û
>W1711385564
MEEI01000032
Actinomycetota
Microbacterium sp. SCN 70-18 [MEEI]
18476
18550
+
Met
CAT
[ENA]
¡û
>W1711385701
MEEL01000054
Actinomycetota
Microbacterium sp. SCN 69-37 [MEEL]
16028
15952
-
Met
CAT
[ENA]
¡û
>W1711503426
MKTP01000001
Actinomycetota
Microbacterium sp. 71-36 [MKTP]
1300627
1300553
-
Met
CAT
[ENA]
¡û
>W1711503493
MKTQ01000029
Actinomycetota
Microbacterium sp. 70-16 [MKTQ]
225661
225587
-
Met
CAT
[ENA]
¡û
>W1711724792
MTQM01000009
Actinomycetota
Microbacterium sp. CSI-V [MTQM]
1102563
1102489
-
Met
CAT
[ENA]
¡û
>W131204581
ATCC01000006
Actinomycetota
Microbacterium sp. oral taxon 186 oral taxon 186 str. F0373 [ATCC]
562973
563049
+
Met
CAT
[ENA]
¡û
>C171065809
CP017674
Actinomycetota
Microbacterium sp. BH-3-3-3 [CP017674]
2751430
2751504
+
Met
CAT
-
¡û
>C171083218
CP018762
Actinomycetota
Microbacterium aurum KACC 15219 [CP018762]
865536
865610
+
Met
CAT
-
¡û
>WENV180554142
OCJM01006381
[OCJM] human gut metagenome; Infant 2 DOL 6 gut
68
142
+
Met
CAT
[ENA]
¢þ
>W141223190
BADA01000386
Actinomycetota
Microbacterium sp. B19 [BADA]
7139
7063
-
Met
CAT
[ENA]
¡û
>W141223248
BADB01000496
Actinomycetota
Microbacterium sp. B24 [BADB]
2547
2471
-
Met
CAT
[ENA]
¡û
>W141256070
CBVQ010000015
Actinomycetota
Microbacterium sp. C448 [CBVQ]
14850
14926
+
Met
CAT
[ENA]
¡û
>W141291986
JAUF01000030
Actinomycetota
Microbacterium sp. MRS-1 [JAUF]
35585
35509
-
Met
CAT
[ENA]
¡û
>WENV183728239
PJTQ01000004
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
102247
102173
-
Met
CAT
[ENA]
¢þ
>WENV183737469
PJUD01009562
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
1276
1202
-
Met
CAT
[ENA]
¢þ
>WENV183740460
PJUF01002353
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
1065
991
-
Met
CAT
[ENA]
¢þ
>WENV170552198
CXWJ01045040
[CXWJ] wastewater metagenome; activated sludge
2237
2161
-
Met
CAT
[ENA]
¢þ
>C181115673
CP025299
Actinomycetota
Microbacterium hominis SJTG1 [CP025299]
938474
938549
+
Met
CAT
-
¡û
>C191074894
CP031423
Actinomycetota
Microbacterium lemovicicum Viu22 [CP031423]
2717792
2717718
-
Met
CAT
-
¡û
>W141739360
JNNT01000137
Actinomycetota
Microbacterium sp. SUBG005 [JNNT]
22273
22199
-
Met
CAT
[ENA]
¡û
>W141739397
JNNT01003525
Actinomycetota
Microbacterium sp. SUBG005 [JNNT]
404
478
+
Met
CAT
[ENA]
¡û
>W1910181924
BJML01000007
Actinomycetota
Microbacterium testaceum NBRC 12675 [BJML]
150531
150605
+
Met
CAT
[ENA]
¡û
>W1910373868
FUHU01000021
Actinomycetota
Agrococcus casei LMG 22410 [FUHU]
866
790
-
Met
CAT
[ENA]
¡û
>W1911075284
NMUM01000019
Actinomycetota
Microbacterium lacus SDZm4 [NMUM]
138250
138324
+
Met
CAT
[ENA]
¡û
>W1911075338
NMUN01000007
Actinomycetota
Microbacterium sp. BR1 [NMUN]
152391
152317
-
Met
CAT
[ENA]
¡û
>W1911140344
NOYP01000050
Actinomycetota
Rhodococcus sp. 06-1477-1B [NOYP]
82614
82689
+
Met
CAT
[ENA]
¡û
>W1810234100
PPEE01000001
Actinomycetota
Microbacterium testaceum KU313 [PPEE]
139354
139428
+
Met
CAT
[ENA]
¡û
>W1810248574
PQBR01000006
Actinomycetota
Microbacterium sp. CJ77 [PQBR]
143353
143427
+
Met
CAT
[ENA]
¡û
>W1810475495
QAJB01000277
Actinomycetota
Microbacterium sp. HMWF026 [QAJB]
274
200
-
Met
CAT
[ENA]
¡û
>W1810538362
QDFT01000025
Actinomycetota
Microbacterium testaceum TPD7010 [QDFT]
37493
37567
+
Met
CAT
[ENA]
¡û
>W1810570375
QEIJ01000008
Actinomycetota
Microbacterium sp. Gd 4-13 [QEIJ]
70416
70492
+
Met
CAT
[ENA]
¡û
>W1810787027
QRDK01000002
Actinomycetota
Microbacterium sp. AG157 [QRDK]
638732
638658
-
Met
CAT
[ENA]
¡û
>W1810861337
QTTU01000003
Actinomycetota
Microbacterium chocolatum 1320 [QTTU]
391137
391061
-
Met
CAT
[ENA]
¡û
>SRA1014817
SRR023845.325948
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
277
203
-
Met
CAT
[SRA]
>C11115181
AP012052
Actinomycetota
Microbacterium testaceum StLB037 [AP012052]
2594609
2594685
+
Met
CAT
[Ensembl]
¡û
>W1511489493
JWSZ01000001
Actinomycetota
Microbacterium hominis TPW29 [JWSZ]
5362
5438
+
Met
CAT
[ENA]
¡û
>W1511584657
LAVO01000010
Actinomycetota
Microbacterium chocolatum SIT 101 [LAVO]
52956
52882
-
Met
CAT
[ENA]
¡û
>C161090892
CP015810
Actinomycetota
Microbacterium chocolatum SIT 101 [CP015810]
68384
68310
-
Met
CAT
-
¡û
>W1610074011
BCWI01000013
Actinomycetota
Microbacterium hominis NBRC 15708 [BCWI]
45231
45307
+
Met
CAT
[ENA]
¡û
>W121061236
AJGR01000118
Actinomycetota
Microbacterium laevaniformans OR221 [AJGR]
215834
215910
+
Met
CAT
[ENA]
¡û
>W1610590758
LDRR01000043
Actinomycetota
Microbacterium testaceum [LDRR]
40580
40506
-
Met
CAT
[ENA]
¡û
>W1610590798
LDRS01000036
Actinomycetota
Microbacterium testaceum [LDRS]
57116
57190
+
Met
CAT
[ENA]
¡û
>W1610590833
LDRT01000023
Actinomycetota
Microbacterium testaceum [LDRT]
25241
25315
+
Met
CAT
[ENA]
¡û
>W1610590905
LDRU01000088
Actinomycetota
Microbacterium testaceum [LDRU]
16039
15965
-
Met
CAT
[ENA]
¡û
>W1610590920
LDRV01000035
Actinomycetota
Microbacterium testaceum [LDRV]
4376
4450
+
Met
CAT
[ENA]
¡û
>W1610727495
LMGL01000001
Actinomycetota
Microbacterium sp. Root166 [LMGL]
211451
211377
-
Met
CAT
[ENA]
¡û
>W1610732394
LMKF01000001
Actinomycetota
Microbacterium sp. Leaf203 [LMKF]
40603
40529
-
Met
CAT
[ENA]
¡û
>W1610738150
LMOR01000003
Actinomycetota
Microbacterium sp. Leaf151 [LMOR]
155686
155762
+
Met
CAT
[ENA]
¡û
>W1610738857
LMPH01000002
Actinomycetota
Microbacterium sp. Leaf179 [LMPH]
606871
606795
-
Met
CAT
[ENA]
¡û
>W1610740942
LMRB01000004
Actinomycetota
Microbacterium sp. Leaf436 [LMRB]
401495
401421
-
Met
CAT
[ENA]
¡û
>W1610767476
LNQG01000009
Actinomycetota
Microbacterium enclense [LNQG]
297508
297434
-
Met
CAT
[ENA]
¡û
>W1610857787
LQQP01000001
Actinomycetota
Microbacterium sp. T32 [LQQP]
127711
127787
+
Met
CAT
[ENA]
¡û
>W1610871160
LRAD01000026
Actinomycetota
Microbacterium laevaniformans [LRAD]
77838
77914
+
Met
CAT
[ENA]
¡û
>W1610902098
LRYC01000057
Actinomycetota
Microbacterium hominis [LRYC]
24282
24358
+
Met
CAT
[ENA]
¡û
>W1610921202
LSTV01000003
Actinomycetota
Microbacterium oleivorans [LSTV]
23251
23325
+
Met
CAT
[ENA]
¡û
>W1710071129
BCWI01000013
Actinomycetota
Microbacterium hominis NBRC 15708 [BCWI]
45231
45307
+
Met
CAT
[ENA]
¡û
>W1710510839
FMYG01000005
Actinomycetota
Microbacterium enclense [FMYG]
336083
336009
-
Met
CAT
[ENA]
¡û
>W1710525103
FNJG01000003
Actinomycetota
Microbacterium sp. ru370.1 [FNJG]
160294
160368
+
Met
CAT
[ENA]
¡û
>W1710525421
FNJN01000004
Actinomycetota
Microbacterium testaceum StLB037 [FNJN]
210122
210196
+
Met
CAT
[ENA]
¡û
>W1710598018
FTNQ01000008
Actinomycetota
Microbacterium sp. RURRCA19A [FTNQ]
6584
6660
+
Met
CAT
[ENA]
¡û
>W1710600077
FTPQ01000003
Actinomycetota
Microbacterium sp. RU1D [FTPQ]
494737
494663
-
Met
CAT
[ENA]
¡û
>W1710710038
LDRR01000043
Actinomycetota
Microbacterium testaceum [LDRR]
40580
40506
-
Met
CAT
[ENA]
¡û
>W1710710078
LDRS01000036
Actinomycetota
Microbacterium testaceum [LDRS]
57116
57190
+
Met
CAT
[ENA]
¡û
>W1710710113
LDRT01000023
Actinomycetota
Microbacterium testaceum [LDRT]
25241
25315
+
Met
CAT
[ENA]
¡û
>W1710710185
LDRU01000088
Actinomycetota
Microbacterium testaceum [LDRU]
16039
15965
-
Met
CAT
[ENA]
¡û
>W1710710200
LDRV01000035
Actinomycetota
Microbacterium testaceum [LDRV]
4376
4450
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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