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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.298620 (6 seq.)
>WENV170002948
AGTN01175740
[AGTN] bioreactor metagenome; poplar biomass
192
267
+
Gln
TTG
[ENA]
¡û
>WENV170019228
BBPD01006342
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
19045
19120
+
Gln
TTG
[ENA]
¡û
>WENV170020699
BBPE01019288
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
322
397
+
Gln
TTG
[ENA]
¡û
>W2110539642
JAGGLG010000023
Bacillota
Symbiobacterium terraclitae DSM 27138 [JAGGLG]
11343
11418
+
Gln
TTG
[ENA]
¡û
>W1511430101
JUEF01000099
Bacillota
Peptococcaceae bacterium BICA1-8 [JUEF]
137
62
-
Gln
TTG
[ENA]
¡û
>W1511564494
LADT01000084
Bacillota
Clostridiaceae bacterium BRH_c20a [LADT]
4995
5070
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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