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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.298766 (113 seq.)
>W1710836197
LLKQ01000001
Campylobacterota
Aliarcobacter thereius LMG 24486 [LLKQ]
67304
67380
+
Asp
GTC
[ENA]
¡û
>W1710836201
LLKQ01000001
Campylobacterota
Aliarcobacter thereius LMG 24486 [LLKQ]
67682
67758
+
Asp
GTC
[ENA]
¡û
>W1710914141
LNTC01000046
Campylobacterota
Aliarcobacter cryaerophilus [LNTC]
2681
2757
+
Asp
GTC
[ENA]
¡û
>W1711055298
LRUQ01000085
Campylobacterota
Aliarcobacter cryaerophilus [LRUQ]
90
166
+
Asp
GTC
[ENA]
¡û
>W1711055325
LRUR01000055
Campylobacterota
Aliarcobacter cryaerophilus [LRUR]
52679
52603
-
Asp
GTC
[ENA]
¡û
>W1711055359
LRUS01000082
Campylobacterota
Aliarcobacter cryaerophilus [LRUS]
90
166
+
Asp
GTC
[ENA]
¡û
>W1711055383
LRUT01000078
Campylobacterota
Aliarcobacter cryaerophilus [LRUT]
90
166
+
Asp
GTC
[ENA]
¡û
>W1711055403
LRUU01000037
Campylobacterota
Aliarcobacter cryaerophilus [LRUU]
9846
9770
-
Asp
GTC
[ENA]
¡û
>W1711055431
LRUV01000025
Campylobacterota
Aliarcobacter cryaerophilus [LRUV]
90
166
+
Asp
GTC
[ENA]
¡û
>W1711055457
LRUW01000022
Campylobacterota
Aliarcobacter skirrowii [LRUW]
7789
7713
-
Asp
GTC
[ENA]
¡û
>W1711055499
LRUX01000029
Campylobacterota
Aliarcobacter skirrowii [LRUX]
90
166
+
Asp
GTC
[ENA]
¡û
>W1711055518
LRUY01000032
Campylobacterota
Aliarcobacter skirrowii [LRUY]
90
166
+
Asp
GTC
[ENA]
¡û
>W1711055548
LRUZ01000014
Campylobacterota
Aliarcobacter skirrowii [LRUZ]
90
166
+
Asp
GTC
[ENA]
¡û
>WENV180283926
OBID01006546
[OBID] metagenome; sludge
3346
3422
+
Asp
GTC
[ENA]
¢þ
>WENV180346652
OBLN01200630
[OBLN] sediment metagenome; sediment
82
6
-
Asp
GTC
[ENA]
¢þ
>WENV180359423
OBNR01079698
[OBNR] marine metagenome; Seawater_00002010_00002149
102
26
-
Asp
GTC
[ENA]
¢þ
>W141274742
JABW01000008
Campylobacterota
Aliarcobacter cibarius LMG 21996 [JABW]
99173
99097
-
Asp
GTC
[ENA]
¡û
>W141274746
JABW01000008
Campylobacterota
Aliarcobacter cibarius LMG 21996 [JABW]
98794
98718
-
Asp
GTC
[ENA]
¡û
>W141289872
JARS01000021
Campylobacterota
Aliarcobacter faecis AF1078 [JARS]
192266
192342
+
Asp
GTC
[ENA]
¡û
>W141289876
JARS01000021
Campylobacterota
Aliarcobacter faecis AF1078 [JARS]
192645
192721
+
Asp
GTC
[ENA]
¡û
>W141289924
JART01000019
Campylobacterota
Arcobacter sp. AF1028 [JART]
192262
192338
+
Asp
GTC
[ENA]
¡û
>W141289928
JART01000019
Campylobacterota
Arcobacter sp. AF1028 [JART]
192641
192717
+
Asp
GTC
[ENA]
¡û
>WENV170554626
CXWK01082686
[CXWK] wastewater metagenome; activated sludge
4580
4504
-
Asp
GTC
[ENA]
¢þ
>WENV170685871
LFRM01113115
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
129
53
-
Asp
GTC
[ENA]
¢þ
>WENV170723623
LSQX01275574
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2418
2342
-
Asp
GTC
[ENA]
¢þ
>C181199798
CP031367
Campylobacterota
Aliarcobacter trophiarum LMG 25534 [CP031367]
1427323
1427399
+
Asp
GTC
-
¡û
>C181199802
CP031367
Campylobacterota
Aliarcobacter trophiarum LMG 25534 [CP031367]
1427701
1427777
+
Asp
GTC
-
¡û
>C191084542
CP032099
Campylobacterota
Aliarcobacter skirrowii CCUG 10374 [CP032099]
1561608
1561684
+
Asp
GTC
-
¡û
>C191084546
CP032099
Campylobacterota
Aliarcobacter skirrowii CCUG 10374 [CP032099]
1561986
1562062
+
Asp
GTC
-
¡û
>C191095035
CP032823
Campylobacterota
Aliarcobacter cryaerophilus ATCC 43158 [CP032823]
1470844
1470920
+
Asp
GTC
-
¡û
>C191095039
CP032823
Campylobacterota
Aliarcobacter cryaerophilus ATCC 43158 [CP032823]
1471227
1471303
+
Asp
GTC
-
¡û
>C191095081
CP032825
Campylobacterota
Aliarcobacter cryaerophilus D2610 [CP032825]
1516361
1516437
+
Asp
GTC
-
¡û
>C191095085
CP032825
Campylobacterota
Aliarcobacter cryaerophilus D2610 [CP032825]
1516744
1516820
+
Asp
GTC
-
¡û
>C191122823
CP034309
Campylobacterota
Aliarcobacter skirrowii A2S6 [CP034309]
1482797
1482873
+
Asp
GTC
-
¡û
>C191147122
CP035926
Campylobacterota
Aliarcobacter thereius LMG 24486 [CP035926]
379208
379132
-
Asp
GTC
-
¡û
>C191147126
CP035926
Campylobacterota
Aliarcobacter thereius LMG 24486 [CP035926]
378830
378754
-
Asp
GTC
-
¡û
>C191149098
CP036246
Campylobacterota
Arcobacter porcinus CCUG 56899 [CP036246]
387576
387500
-
Asp
GTC
-
¡û
>C191149102
CP036246
Campylobacterota
Arcobacter porcinus CCUG 56899 [CP036246]
387192
387116
-
Asp
GTC
-
¡û
>W1911424325
NXGC01000001
Campylobacterota
Aliarcobacter cryaerophilus LMG 29976 [NXGC]
595080
595004
-
Asp
GTC
[ENA]
¡û
>W1911424329
NXGC01000001
Campylobacterota
Aliarcobacter cryaerophilus LMG 29976 [NXGC]
594698
594622
-
Asp
GTC
[ENA]
¡û
>W1911424384
NXGD01000007
Campylobacterota
Aliarcobacter cryaerophilus LMG 10229 [NXGD]
121879
121803
-
Asp
GTC
[ENA]
¡û
>W1911424403
NXGE01000001
Campylobacterota
Aliarcobacter cryaerophilus LMG 10210 [NXGE]
189479
189555
+
Asp
GTC
[ENA]
¡û
>W1911424407
NXGE01000001
Campylobacterota
Aliarcobacter cryaerophilus LMG 10210 [NXGE]
189863
189939
+
Asp
GTC
[ENA]
¡û
>W1911424536
NXGH01000002
Campylobacterota
Aliarcobacter cryaerophilus LMG 9871 [NXGH]
108736
108660
-
Asp
GTC
[ENA]
¡û
>W1911424540
NXGH01000002
Campylobacterota
Aliarcobacter cryaerophilus LMG 9871 [NXGH]
108351
108275
-
Asp
GTC
[ENA]
¡û
>W1911424594
NXGI01000008
Campylobacterota
Aliarcobacter cryaerophilus LMG 9065 [NXGI]
7554
7630
+
Asp
GTC
[ENA]
¡û
>W1911424619
NXGJ01000001
Campylobacterota
Aliarcobacter cryaerophilus LMG 9861 [NXGJ]
472071
471995
-
Asp
GTC
[ENA]
¡û
>W1911424623
NXGJ01000001
Campylobacterota
Aliarcobacter cryaerophilus LMG 9861 [NXGJ]
471687
471611
-
Asp
GTC
[ENA]
¡û
>W1911424652
NXGK01000002
Campylobacterota
Aliarcobacter cryaerophilus LMG 24291 [NXGK]
43
119
+
Asp
GTC
[ENA]
¡û
>W1911424689
NXGK01000069
Campylobacterota
Aliarcobacter cryaerophilus LMG 24291 [NXGK]
428
352
-
Asp
GTC
[ENA]
¡û
>W1911426143
NXIC01000002
Campylobacterota
Aliarcobacter skirrowii CCUG 10374 LMG 6621 [NXIC]
265523
265447
-
Asp
GTC
[ENA]
¡û
>W1911426147
NXIC01000002
Campylobacterota
Aliarcobacter skirrowii CCUG 10374 LMG 6621 [NXIC]
265145
265069
-
Asp
GTC
[ENA]
¡û
>W1911576077
PDJS01000009
Campylobacterota
Aliarcobacter trophiarum CECT 7650 [PDJS]
32803
32727
-
Asp
GTC
[ENA]
¡û
>W1911576125
PDJT01000103
Campylobacterota
Aliarcobacter skirrowii F28 [PDJT]
470
394
-
Asp
GTC
[ENA]
¡û
>W1911576128
PDJT01000108
Campylobacterota
Aliarcobacter skirrowii F28 [PDJT]
210
134
-
Asp
GTC
[ENA]
¡û
>W1911576554
PDKD01000012
Campylobacterota
Aliarcobacter trophiarum LMG 25534 [PDKD]
33332
33256
-
Asp
GTC
[ENA]
¡û
>W1911576558
PDKD01000012
Campylobacterota
Aliarcobacter trophiarum LMG 25534 [PDKD]
32954
32878
-
Asp
GTC
[ENA]
¡û
>W1911576716
PDKH01000003
Campylobacterota
Arcobacter sp. CECT 9299 [PDKH]
44917
44993
+
Asp
GTC
[ENA]
¡û
>W1911576720
PDKH01000003
Campylobacterota
Arcobacter sp. CECT 9299 [PDKH]
45295
45371
+
Asp
GTC
[ENA]
¡û
>W1911748921
QWFD01000003
Campylobacterota
Aliarcobacter skirrowii 17-1208-1 [QWFD]
135527
135451
-
Asp
GTC
[ENA]
¡û
>W1911748925
QWFD01000003
Campylobacterota
Aliarcobacter skirrowii 17-1208-1 [QWFD]
135149
135073
-
Asp
GTC
[ENA]
¡û
>W1911748963
QWFE01000003
Campylobacterota
Aliarcobacter skirrowii 17-1206-2 [QWFE]
48582
48658
+
Asp
GTC
[ENA]
¡û
>W1911748967
QWFE01000003
Campylobacterota
Aliarcobacter skirrowii 17-1206-2 [QWFE]
48960
49036
+
Asp
GTC
[ENA]
¡û
>W1810584115
QEYG01000047
Campylobacterota
Aliarcobacter skirrowii 17-1201-3 [QEYG]
12329
12405
+
Asp
GTC
[ENA]
¡û
>W1810584119
QEYG01000047
Campylobacterota
Aliarcobacter skirrowii 17-1201-3 [QEYG]
12707
12783
+
Asp
GTC
[ENA]
¡û
>W1810584143
QEYH01000003
Campylobacterota
Aliarcobacter skirrowii 17-1201-4 [QEYH]
135527
135451
-
Asp
GTC
[ENA]
¡û
>W1810584147
QEYH01000003
Campylobacterota
Aliarcobacter skirrowii 17-1201-4 [QEYH]
135149
135073
-
Asp
GTC
[ENA]
¡û
>W1810584182
QEYI01000002
Campylobacterota
Aliarcobacter skirrowii 17-1208-2 [QEYI]
293841
293765
-
Asp
GTC
[ENA]
¡û
>W1810584186
QEYI01000002
Campylobacterota
Aliarcobacter skirrowii 17-1208-2 [QEYI]
293473
293397
-
Asp
GTC
[ENA]
¡û
>W1610584438
LCSK01000001
Campylobacterota
Arcobacter porcinus [LCSK]
64164
64240
+
Asp
GTC
[ENA]
¡û
>W1610584442
LCSK01000001
Campylobacterota
Arcobacter porcinus [LCSK]
64549
64625
+
Asp
GTC
[ENA]
¡û
>W1610584505
LCSL01000004
Campylobacterota
Arcobacter porcinus [LCSL]
85134
85058
-
Asp
GTC
[ENA]
¡û
>W1610584509
LCSL01000004
Campylobacterota
Arcobacter porcinus [LCSL]
84749
84673
-
Asp
GTC
[ENA]
¡û
>W1610584931
LCUH01000011
Campylobacterota
Aliarcobacter thereius [LCUH]
20127
20051
-
Asp
GTC
[ENA]
¡û
>W1610584935
LCUH01000011
Campylobacterota
Aliarcobacter thereius [LCUH]
19743
19667
-
Asp
GTC
[ENA]
¡û
>W1610584941
LCUI01000001
Campylobacterota
Arcobacter porcinus [LCUI]
64294
64370
+
Asp
GTC
[ENA]
¡û
>W1610584945
LCUI01000001
Campylobacterota
Arcobacter porcinus [LCUI]
64679
64755
+
Asp
GTC
[ENA]
¡û
>W1610584983
LCUJ01000001
Campylobacterota
Aliarcobacter thereius [LCUJ]
76968
77044
+
Asp
GTC
[ENA]
¡û
>W1610584987
LCUJ01000001
Campylobacterota
Aliarcobacter thereius [LCUJ]
77346
77422
+
Asp
GTC
[ENA]
¡û
>W1610585032
LCUK01000001
Campylobacterota
Aliarcobacter thereius [LCUK]
438201
438125
-
Asp
GTC
[ENA]
¡û
>W1610585036
LCUK01000001
Campylobacterota
Aliarcobacter thereius [LCUK]
437823
437747
-
Asp
GTC
[ENA]
¡û
>W1610586361
LDIR01000001
Campylobacterota
Arcobacter porcinus [LDIR]
1129766
1129690
-
Asp
GTC
[ENA]
¡û
>W1610586365
LDIR01000001
Campylobacterota
Arcobacter porcinus [LDIR]
1129381
1129305
-
Asp
GTC
[ENA]
¡û
>W1610586415
LDIS01000002
Campylobacterota
Aliarcobacter thereius [LDIS]
439965
439889
-
Asp
GTC
[ENA]
¡û
>W1610586419
LDIS01000002
Campylobacterota
Aliarcobacter thereius [LDIS]
439587
439511
-
Asp
GTC
[ENA]
¡û
>W1610699336
LLKQ01000001
Campylobacterota
Aliarcobacter thereius LMG 24486 [LLKQ]
67304
67380
+
Asp
GTC
[ENA]
¡û
>W1610699340
LLKQ01000001
Campylobacterota
Aliarcobacter thereius LMG 24486 [LLKQ]
67682
67758
+
Asp
GTC
[ENA]
¡û
>W1610896344
LRUQ01000085
Campylobacterota
Aliarcobacter cryaerophilus [LRUQ]
90
166
+
Asp
GTC
[ENA]
¡û
>W1610896371
LRUR01000055
Campylobacterota
Aliarcobacter cryaerophilus [LRUR]
52679
52603
-
Asp
GTC
[ENA]
¡û
>W1610896405
LRUS01000082
Campylobacterota
Aliarcobacter cryaerophilus [LRUS]
90
166
+
Asp
GTC
[ENA]
¡û
>W1610896429
LRUT01000078
Campylobacterota
Aliarcobacter cryaerophilus [LRUT]
90
166
+
Asp
GTC
[ENA]
¡û
>W1610896449
LRUU01000037
Campylobacterota
Aliarcobacter cryaerophilus [LRUU]
9846
9770
-
Asp
GTC
[ENA]
¡û
>W1610896477
LRUV01000025
Campylobacterota
Aliarcobacter cryaerophilus [LRUV]
90
166
+
Asp
GTC
[ENA]
¡û
>W1610896503
LRUW01000022
Campylobacterota
Aliarcobacter skirrowii [LRUW]
7789
7713
-
Asp
GTC
[ENA]
¡û
>W1610896545
LRUX01000029
Campylobacterota
Aliarcobacter skirrowii [LRUX]
90
166
+
Asp
GTC
[ENA]
¡û
>W1610896564
LRUY01000032
Campylobacterota
Aliarcobacter skirrowii [LRUY]
90
166
+
Asp
GTC
[ENA]
¡û
>W1610896594
LRUZ01000014
Campylobacterota
Aliarcobacter skirrowii [LRUZ]
90
166
+
Asp
GTC
[ENA]
¡û
>W1710703655
LCSK01000001
Campylobacterota
Arcobacter porcinus [LCSK]
64164
64240
+
Asp
GTC
[ENA]
¡û
>W1710703659
LCSK01000001
Campylobacterota
Arcobacter porcinus [LCSK]
64549
64625
+
Asp
GTC
[ENA]
¡û
>W1710703722
LCSL01000004
Campylobacterota
Arcobacter porcinus [LCSL]
85134
85058
-
Asp
GTC
[ENA]
¡û
>W1710703726
LCSL01000004
Campylobacterota
Arcobacter porcinus [LCSL]
84749
84673
-
Asp
GTC
[ENA]
¡û
>W1710704122
LCUH01000011
Campylobacterota
Aliarcobacter thereius [LCUH]
20127
20051
-
Asp
GTC
[ENA]
¡û
>W1710704126
LCUH01000011
Campylobacterota
Aliarcobacter thereius [LCUH]
19743
19667
-
Asp
GTC
[ENA]
¡û
>W1710704132
LCUI01000001
Campylobacterota
Arcobacter porcinus [LCUI]
64294
64370
+
Asp
GTC
[ENA]
¡û
>W1710704136
LCUI01000001
Campylobacterota
Arcobacter porcinus [LCUI]
64679
64755
+
Asp
GTC
[ENA]
¡û
>W1710704174
LCUJ01000001
Campylobacterota
Aliarcobacter thereius [LCUJ]
76968
77044
+
Asp
GTC
[ENA]
¡û
>W1710704178
LCUJ01000001
Campylobacterota
Aliarcobacter thereius [LCUJ]
77346
77422
+
Asp
GTC
[ENA]
¡û
>W1710704223
LCUK01000001
Campylobacterota
Aliarcobacter thereius [LCUK]
438201
438125
-
Asp
GTC
[ENA]
¡û
>W1710704227
LCUK01000001
Campylobacterota
Aliarcobacter thereius [LCUK]
437823
437747
-
Asp
GTC
[ENA]
¡û
>W1710705491
LDIR01000001
Campylobacterota
Arcobacter porcinus [LDIR]
1129766
1129690
-
Asp
GTC
[ENA]
¡û
>W1710705495
LDIR01000001
Campylobacterota
Arcobacter porcinus [LDIR]
1129381
1129305
-
Asp
GTC
[ENA]
¡û
>W1710705545
LDIS01000002
Campylobacterota
Aliarcobacter thereius [LDIS]
439965
439889
-
Asp
GTC
[ENA]
¡û
>W1710705549
LDIS01000002
Campylobacterota
Aliarcobacter thereius [LDIS]
439587
439511
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK