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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.29895 (79 seq.)
>W1710858011
LMAR01000012
Alphaproteobacteria
Bosea thiooxidans [LMAR]
132730
132641
-
Ser
TGA
[ENA]
¡û
>W1710869473
LMJT01000007
Alphaproteobacteria
Bosea sp. Root381 [LMJT]
97996
97907
-
Ser
TGA
[ENA]
¡û
>W1710874141
LMNJ01000004
Alphaproteobacteria
Methylobacterium sp. Leaf113 [LMNJ]
53914
53825
-
Ser
TGA
[ENA]
¡û
>W1710874278
LMNL01000037
Alphaproteobacteria
Methylobacterium sp. Leaf117 [LMNL]
374866
374955
+
Ser
TGA
[ENA]
¡û
>W1710893351
LNER01000134
Alphaproteobacteria
Rhizobiales bacterium Ga0074135 [LNER]
13469
13558
+
Ser
TGA
[ENA]
¡û
>W1710912991
LNSB01000056
Alphaproteobacteria
Sphingopyxis sp. HIX [LNSB]
8229
8140
-
Ser
TGA
[ENA]
¡û
>W1711072932
LSIB01000057
Alphaproteobacteria
Rhizobiales bacterium CCH3-A5 [LSIB]
28853
28942
+
Ser
TGA
[ENA]
¡û
>W1711073116
LSIG01000021
Alphaproteobacteria
Rhizobiales bacterium CCH10-E5 [LSIG]
9695
9606
-
Ser
TGA
[ENA]
¡û
>W1711073807
LSIY01000060
Alphaproteobacteria
Bradyrhizobium sp. CCH1-B1 [LSIY]
10505
10594
+
Ser
TGA
[ENA]
¡û
>W1711074597
LSJR01000198
Alphaproteobacteria
Rhizobiales bacterium CCH8-D1 [LSJR]
281
192
-
Ser
TGA
[ENA]
¡û
>W1711074720
LSJU01000474
Alphaproteobacteria
Erythrobacter donghaensis [LSJU]
4256
4345
+
Ser
TGA
[ENA]
¡û
>W1711421959
MIAI01000167
Alphaproteobacteria
Sphingomonadales bacterium GWF1_63_6 [MIAI]
10090
10179
+
Ser
TGA
[ENA]
¡û
>W131218782
ATYA01000002
Alphaproteobacteria
Methylocapsa acidiphila B2 [ATYA]
535968
536057
+
Ser
TGA
[ENA]
¡û
>C171057741
CP017147
Alphaproteobacteria
Bosea vaviloviae Vaf18 [CP017147]
4341777
4341866
+
Ser
TGA
-
¡û
>W131166485
ARCM01000005
Alphaproteobacteria
Ancylobacter sp. FA202 [ARCM]
11294
11383
+
Ser
TGA
[ENA]
¡û
>W131222228
AUBC01000004
Alphaproteobacteria
Salinarimonas rosea DSM 21201 [AUBC]
45722
45811
+
Ser
TGA
[ENA]
¡û
>w015391
AAPC01000001
Alphaproteobacteria
Xanthobacter autotrophicus Py2 [AAPC]
180207
180116
-
Ser
TGA
[ENA]
¡û
>WENV180028206
FTJA01003482
[FTJA] metagenome; soil
1279
1190
-
Ser
TGA
[ENA]
¢þ
>WENV180028211
FTJA01004259
[FTJA] metagenome; soil
628
539
-
Ser
TGA
[ENA]
¢þ
>WENV180035432
FTKZ01000266
[FTKZ] metagenome; soil
805
716
-
Ser
TGA
[ENA]
¢þ
>WENV181227449
OFDN01010847
[OFDN] hot springs metagenome; Water
2568
2479
-
Ser
TGA
[ENA]
¢þ
>WENV181307940
OFIS01000049
[OFIS] sludge metagenome; sludge
46769
46680
-
Ser
TGA
[ENA]
¢þ
>WENV181311115
OFJB01000030
[OFJB] sludge metagenome; sludge
50897
50986
+
Ser
TGA
[ENA]
¢þ
>WENV181401333
OFTX01000005
[OFTX] sludge metagenome; sludge
125183
125094
-
Ser
TGA
[ENA]
¢þ
>WENV181415554
OGCL01014382
[OGCL] hot springs metagenome; Hot spring water
1652
1563
-
Ser
TGA
[ENA]
¢þ
>W141151360
AXBA01000001
Alphaproteobacteria
Azorhizobium doebereinerae UFLA1-100 [AXBA]
226608
226697
+
Ser
TGA
[ENA]
¡û
>C08011458
CP000781
Alphaproteobacteria
Xanthobacter autotrophicus Py2 [CP000781]
4795444
4795358
-
Ser
TGA
[Ensembl]
¡û
>W141241677
CAHM01000037
Alphaproteobacteria
Microvirga massiliensis JC119 [CAHM]
8616
8705
+
Ser
TGA
[ENA]
¡û
>WENV183729886
PJTR01000146
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
75631
75542
-
Ser
TGA
[ENA]
¢þ
>WENV183730527
PJTS01000093
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
75631
75542
-
Ser
TGA
[ENA]
¢þ
>WENV183733044
PJTY01000028
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
177054
176965
-
Ser
TGA
[ENA]
¢þ
>WENV183734421
PJTZ01006542
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
172
261
+
Ser
TGA
[ENA]
¢þ
>WENV183736996
PJUD01000194
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
31413
31502
+
Ser
TGA
[ENA]
¢þ
>WENV183749850
PPFU01221394
[PPFU] hypolithon metagenome; Antarctic Hypolithon
298
209
-
Ser
TGA
[ENA]
¢þ
>W141426749
JEMV01000052
Alphaproteobacteria
Sphingobium sp. Ant17 [JEMV]
16647
16558
-
Ser
TGA
[ENA]
¡û
>WENV171003751
NNBV01000600
[NNBV] plant metagenome; symbiotic tissue sample KVS11
127616
127705
+
Ser
TGA
[ENA]
¢þ
>C181063193
CP022372
Alphaproteobacteria
Bosea sp. AS-1 [CP022372]
2951924
2952013
+
Ser
TGA
-
¡û
>C191014004
CP017946
Alphaproteobacteria
Bosea sp. Tri-49 [CP017946]
1245390
1245479
+
Ser
TGA
-
¡û
>C191152099
CP036515
Alphaproteobacteria
Lichenihabitans psoromatis PAMC 29148 [CP036515]
3469494
3469405
-
Ser
TGA
-
¡û
>C191220324
LR536450
Alphaproteobacteria
Methylocella tundrae [LR536450]
1348844
1348933
+
Ser
TGA
-
¡û
>W141733763
JNLC01000017
Alphaproteobacteria
Bosea sp. 117 [JNLC]
152526
152615
+
Ser
TGA
[ENA]
¡û
>W141805299
JPKG01000034
Alphaproteobacteria
Bosea sp. LC85 [JPKG]
17830
17919
+
Ser
TGA
[ENA]
¡û
>W141815811
JQJJ01000011
Alphaproteobacteria
Bosea sp. UNC402CLCol [JQJJ]
9879
9968
+
Ser
TGA
[ENA]
¡û
>W1910199111
FBVT01000005
Alphaproteobacteria
Sphingobium sp. Z007 [FBVT]
10118
10207
+
Ser
TGA
[ENA]
¡û
>W1910199289
FBVW01000014
Alphaproteobacteria
Sphingobium sp. Z007 [FBVW]
166425
166336
-
Ser
TGA
[ENA]
¡û
>W1910199992
FBXK01000005
Alphaproteobacteria
Sphingobium sp. Z007 [FBXK]
1149426
1149337
-
Ser
TGA
[ENA]
¡û
>W1910232067
FPEJ01000013
Alphaproteobacteria
Hyphomicrobium sp. NDB2Meth4 [FPEJ]
689763
689674
-
Ser
TGA
[ENA]
¡û
>W1910501743
FYAS01000054
Alphaproteobacteria
Bosea sp. CS1GBMeth4 [FYAS]
23183
23272
+
Ser
TGA
[ENA]
¡û
>W1910840181
MZXU01000017
Alphaproteobacteria
Bosea sp. Tri-54 [MZXU]
1823968
1824057
+
Ser
TGA
[ENA]
¡û
>W1910847630
NBDP01000003
Alphaproteobacteria
Bosea sp. Tri-44 [NBDP]
838790
838879
+
Ser
TGA
[ENA]
¡û
>W1911074982
NMUA01000001
Alphaproteobacteria
Sphingobium sp. D43FB [NMUA]
240167
240256
+
Ser
TGA
[ENA]
¡û
>W1911114833
NOIW01000068
Alphaproteobacteria
Sphingobium sp. IP1 [NOIW]
673
762
+
Ser
TGA
[ENA]
¡û
>W1911722454
QRAL01000041
Alphaproteobacteria
Sphingobium yanoikuyae SK-NIH.Env6_1116 [QRAL]
31201
31112
-
Ser
TGA
[ENA]
¡û
>W1810251993
PQFZ01000002
Alphaproteobacteria
Bosea psychrotolerans 1131 [PQFZ]
197342
197431
+
Ser
TGA
[ENA]
¡û
>W1810273168
PSNV01000004
Alphaproteobacteria
Kaistia algarum LYH11 [PSNV]
27804
27715
-
Ser
TGA
[ENA]
¡û
>W1810676902
QKMI01000008
Alphaproteobacteria
Bosea sp. CF476 [QKMI]
334386
334297
-
Ser
TGA
[ENA]
¡û
>W1810783311
QQTO01000020
Alphaproteobacteria
Bosea caraganae RCAM04680 [QQTO]
242291
242380
+
Ser
TGA
[ENA]
¡û
>W1810783366
QQTP01000019
Alphaproteobacteria
Bosea caraganae RCAM04685 [QQTP]
8099
8010
-
Ser
TGA
[ENA]
¡û
>W1511353009
JROW01000100
Alphaproteobacteria
Methylobacterium sp. ZNC0032 [JROW]
2543
2454
-
Ser
TGA
[ENA]
¡û
>C161070672
CP014301
Alphaproteobacteria
Bosea sp. PAMC 26642 [CP014301]
1582327
1582416
+
Ser
TGA
[Ensembl]
¡û
>W1610617186
LGSZ01000060
Alphaproteobacteria
Bosea vaviloviae [LGSZ]
100653
100742
+
Ser
TGA
[ENA]
¡û
>W1610720357
LMAR01000012
Alphaproteobacteria
Bosea thiooxidans [LMAR]
132730
132641
-
Ser
TGA
[ENA]
¡û
>W1610731819
LMJT01000007
Alphaproteobacteria
Bosea sp. Root381 [LMJT]
97996
97907
-
Ser
TGA
[ENA]
¡û
>W1610736487
LMNJ01000004
Alphaproteobacteria
Methylobacterium sp. Leaf113 [LMNJ]
53914
53825
-
Ser
TGA
[ENA]
¡û
>W1610736624
LMNL01000037
Alphaproteobacteria
Methylobacterium sp. Leaf117 [LMNL]
374866
374955
+
Ser
TGA
[ENA]
¡û
>W1610753617
LNER01000134
Alphaproteobacteria
Rhizobiales bacterium Ga0074135 [LNER]
13469
13558
+
Ser
TGA
[ENA]
¡û
>W1610771350
LNSB01000056
Alphaproteobacteria
Sphingopyxis sp. HIX [LNSB]
8229
8140
-
Ser
TGA
[ENA]
¡û
>W1610912192
LSIB01000057
Alphaproteobacteria
Rhizobiales bacterium CCH3-A5 [LSIB]
28853
28942
+
Ser
TGA
[ENA]
¡û
>W1610912421
LSIG01000021
Alphaproteobacteria
Rhizobiales bacterium CCH10-E5 [LSIG]
9695
9606
-
Ser
TGA
[ENA]
¡û
>W1610913112
LSIY01000060
Alphaproteobacteria
Bradyrhizobium sp. CCH1-B1 [LSIY]
10505
10594
+
Ser
TGA
[ENA]
¡û
>W1610913902
LSJR01000198
Alphaproteobacteria
Rhizobiales bacterium CCH8-D1 [LSJR]
281
192
-
Ser
TGA
[ENA]
¡û
>W1610914025
LSJU01000474
Alphaproteobacteria
Erythrobacter donghaensis [LSJU]
4256
4345
+
Ser
TGA
[ENA]
¡û
>W1710064198
BCQA01000001
Alphaproteobacteria
Bosea sp. BIWAKO-01 [BCQA]
5095445
5095356
-
Ser
TGA
[ENA]
¡û
>W1710505294
FMTP01000001
Alphaproteobacteria
Ancylobacter rudongensis [FMTP]
980678
980589
-
Ser
TGA
[ENA]
¡û
>W1710544003
FOAN01000001
Alphaproteobacteria
Bosea lupini [FOAN]
258581
258670
+
Ser
TGA
[ENA]
¡û
>W1710564897
FOQV01000001
Alphaproteobacteria
Bosea sp. OK403 [FOQV]
907908
907997
+
Ser
TGA
[ENA]
¡û
>W1710567156
FOSN01000002
Alphaproteobacteria
Methylocapsa palsarum [FOSN]
83250
83339
+
Ser
TGA
[ENA]
¡û
>W1710603271
FUYX01000003
Alphaproteobacteria
Bosea thiooxidans [FUYX]
156847
156936
+
Ser
TGA
[ENA]
¡û
>W1710742800
LGSZ01000060
Alphaproteobacteria
Bosea vaviloviae [LGSZ]
100653
100742
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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