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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.298951 (38 seq.)
>W1711339823
MCAP01000035
Gammaproteobacteria
Salinicola sp. MIT1003 [MCAP]
2087
2163
+
Ile
GAT
[ENA]
¡û
>W1711688845
MSDO01000018
Gammaproteobacteria
Salinicola socius [MSDO]
3696
3620
-
Ile
GAT
[ENA]
¡û
>W1711688952
MSDP01000056
Gammaproteobacteria
Salinicola sp. MH3R3-1 [MSDP]
525
601
+
Ile
GAT
[ENA]
¡û
>W1711688956
MSDP01000073
Gammaproteobacteria
Salinicola sp. MH3R3-1 [MSDP]
604
528
-
Ile
GAT
[ENA]
¡û
>W1711688959
MSDP01000078
Gammaproteobacteria
Salinicola sp. MH3R3-1 [MSDP]
835
759
-
Ile
GAT
[ENA]
¡û
>W1712082147
NHOU01000070
Gammaproteobacteria
Salinicola salarius [NHOU]
1684
1760
+
Ile
GAT
[ENA]
¡û
>C171073638
CP018139
Gammaproteobacteria
Halomonas aestuarii Hb3 [CP018139]
1927251
1927327
+
Ile
GAT
-
¡û
>C171117473
CP021323
Gammaproteobacteria
Kushneria konosiri X49 [CP021323]
2110797
2110873
+
Ile
GAT
-
¡û
>C171117513
CP021323
Gammaproteobacteria
Kushneria konosiri X49 [CP021323]
884752
884676
-
Ile
GAT
-
¡û
>C171117520
CP021323
Gammaproteobacteria
Kushneria konosiri X49 [CP021323]
799191
799115
-
Ile
GAT
-
¡û
>C171117532
CP021323
Gammaproteobacteria
Kushneria konosiri X49 [CP021323]
96214
96138
-
Ile
GAT
-
¡û
>C171117977
CP021358
Gammaproteobacteria
Kushneria marisflavi SW32 [CP021358]
2414670
2414746
+
Ile
GAT
-
¡û
>C171117984
CP021358
Gammaproteobacteria
Kushneria marisflavi SW32 [CP021358]
2500219
2500295
+
Ile
GAT
-
¡û
>C171117996
CP021358
Gammaproteobacteria
Kushneria marisflavi SW32 [CP021358]
3248521
3248597
+
Ile
GAT
-
¡û
>C171118011
CP021358
Gammaproteobacteria
Kushneria marisflavi SW32 [CP021358]
1094849
1094773
-
Ile
GAT
-
¡û
>WENV170361813
CETM01029579
[CETM] marine metagenome genome assembly TARA_122_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
273
349
+
Ile
GAT
[ENA]
¢þ
>WENV170528666
CEWJ01062705
[CEWJ] marine metagenome genome assembly TARA_128_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
141
217
+
Ile
GAT
[ENA]
¢þ
>C191005884
AP018933
Gammaproteobacteria
Zymobacter palmae IAM14233 [AP018933]
299195
299271
+
Ile
GAT
-
¡û
>C191005898
AP018933
Gammaproteobacteria
Zymobacter palmae IAM14233 [AP018933]
641422
641498
+
Ile
GAT
-
¡û
>C191005902
AP018933
Gammaproteobacteria
Zymobacter palmae IAM14233 [AP018933]
933061
933137
+
Ile
GAT
-
¡û
>C191005915
AP018933
Gammaproteobacteria
Zymobacter palmae IAM14233 [AP018933]
1159194
1159270
+
Ile
GAT
-
¡û
>C191005925
AP018933
Gammaproteobacteria
Zymobacter palmae IAM14233 [AP018933]
2918014
2917938
-
Ile
GAT
-
¡û
>C191005931
AP018933
Gammaproteobacteria
Zymobacter palmae IAM14233 [AP018933]
2444817
2444741
-
Ile
GAT
-
¡û
>C191005938
AP018933
Gammaproteobacteria
Zymobacter palmae IAM14233 [AP018933]
2278578
2278502
-
Ile
GAT
-
¡û
>C191005950
AP018933
Gammaproteobacteria
Zymobacter palmae IAM14233 [AP018933]
1646566
1646490
-
Ile
GAT
-
¡û
>W141727029
JNCK01000001
Gammaproteobacteria
Halomonas zincidurans B6 [JNCK]
2956277
2956201
-
Ile
GAT
[ENA]
¡û
>W1911539910
ONZI01000008
Gammaproteobacteria
Kushneria phyllosphaerae EAod3 [ONZI]
2014
2090
+
Ile
GAT
[ENA]
¡û
>W1911747126
QWBW01000059
Gammaproteobacteria
Halomonas coralii 362.1 [QWBW]
517
593
+
Ile
GAT
[ENA]
¡û
>W1911747128
QWBW01000061
Gammaproteobacteria
Halomonas coralii 362.1 [QWBW]
624
548
-
Ile
GAT
[ENA]
¡û
>W1810444331
PZJO01000016
Gammaproteobacteria
Salinicola endophyticus CPA92 [PZJO]
81
5
-
Ile
GAT
[ENA]
¡û
>W1810444393
PZJP01000021
Gammaproteobacteria
Salinicola aestuarinus CPA62 [PZJP]
3674
3598
-
Ile
GAT
[ENA]
¡û
>W1810444453
PZJQ01000008
Gammaproteobacteria
Salinicola halimionae CPA60 [PZJQ]
3587
3511
-
Ile
GAT
[ENA]
¡û
>W1810444516
PZJR01000022
Gammaproteobacteria
Salinicola sp. CPA57 [PZJR]
1965
2041
+
Ile
GAT
[ENA]
¡û
>W1810444577
PZJS01000024
Gammaproteobacteria
Salinicola socius DSM 19940 [PZJS]
1920
1996
+
Ile
GAT
[ENA]
¡û
>W1810444643
PZJT01000030
Gammaproteobacteria
Salinicola salarius DSM 18044 [PZJT]
3744
3668
-
Ile
GAT
[ENA]
¡û
>W1810444769
PZJV01000010
Gammaproteobacteria
Salinicola halophilus CECT 5903 [PZJV]
81
5
-
Ile
GAT
[ENA]
¡û
>W1511053651
JIBT01000055
Gammaproteobacteria
Halomonas sp. PR-M31 [JIBT]
1537
1613
+
Ile
GAT
[ENA]
¡û
>W1710528607
FNNI01000014
Gammaproteobacteria
Aidingimonas halophila [FNNI]
3805
3729
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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