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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.299073 (38 seq.)
>W1710853025
LLWF02000141
Alphaproteobacteria
Roseomonas mucosa [LLWF]
3882
3807
-
Ile
GAT
[ENA]
¡û
>W1711511615
MLCO01000159
Alphaproteobacteria
Pseudoroseomonas deserti M3 [MLCO]
3571
3496
-
Ile
GAT
[ENA]
¡û
>C171039526
CP015583
Alphaproteobacteria
Roseomonas gilardii U14-5 [CP015583, CP015584]
174151
174226
+
Ile
GAT
-
¡û
>C171039536
CP015583
Alphaproteobacteria
Roseomonas gilardii U14-5 [CP015583, CP015584]
1692208
1692283
+
Ile
GAT
-
¡û
>C171039552
CP015583
Alphaproteobacteria
Roseomonas gilardii U14-5 [CP015583, CP015584]
3990075
3990000
-
Ile
GAT
-
¡û
>C171039556
CP015583
Alphaproteobacteria
Roseomonas gilardii U14-5 [CP015583, CP015584]
3486888
3486813
-
Ile
GAT
-
¡û
>C171039570
CP015583
Alphaproteobacteria
Roseomonas gilardii U14-5 [CP015583, CP015584]
2175379
2175304
-
Ile
GAT
-
¡û
>WENV181191394
OEPS010075501
[OEPS] soil metagenome; soil
540
467
-
Ile
GAT
[ENA]
¢þ
>WENV181416847
OGCL01164754
[OGCL] hot springs metagenome; Hot spring water
290
366
+
Ile
GAT
[ENA]
¢þ
>WENV170003066
AGTN01216180
[AGTN] bioreactor metagenome; poplar biomass
334
258
-
Ile
GAT
[ENA]
¢þ
>WENV170020524
BBPE01010430
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
575
499
-
Ile
GAT
[ENA]
¢þ
>WENV170576885
FRDC01002003
[FRDC] freshwater metagenome; water
638
711
+
Ile
GAT
[ENA]
¢þ
>WENV170714286
LNFM01065400
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
431
504
+
Ile
GAT
[ENA]
¢þ
>WENV170714502
LNFM01077672
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
460
535
+
Ile
GAT
[ENA]
¢þ
>WENV170714559
LNFM01081913
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1233
1157
-
Ile
GAT
[ENA]
¢þ
>WENV170714954
LNFM01118985
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2896
2820
-
Ile
GAT
[ENA]
¢þ
>C181102011
CP024588
Alphaproteobacteria
Roseomonas sp. FDAARGOS_362 [CP024588]
617112
617187
+
Ile
GAT
-
¡û
>C181102026
CP024588
Alphaproteobacteria
Roseomonas sp. FDAARGOS_362 [CP024588]
3261163
3261238
+
Ile
GAT
-
¡û
>C181102038
CP024588
Alphaproteobacteria
Roseomonas sp. FDAARGOS_362 [CP024588]
2825507
2825432
-
Ile
GAT
-
¡û
>C181102042
CP024588
Alphaproteobacteria
Roseomonas sp. FDAARGOS_362 [CP024588]
2130057
2129982
-
Ile
GAT
-
¡û
>C181102049
CP024588
Alphaproteobacteria
Roseomonas sp. FDAARGOS_362 [CP024588]
1078273
1078198
-
Ile
GAT
-
¡û
>W141558740
JHWD01000071
Alphaproteobacteria
Roseomonas mucosa ATCC BAA-692 [JHWD]
1686
1761
+
Ile
GAT
[ENA]
¡û
>W1911768607
QXGS01000127
Alphaproteobacteria
Pseudoroseomonas vastitatis CPCC 101021 [QXGS]
133
58
-
Ile
GAT
[ENA]
¡û
>W1810062071
PDNU01000089
Alphaproteobacteria
Pseudoroseomonas rhizosphaerae YW11 [PDNU]
2042
2117
+
Ile
GAT
[ENA]
¡û
>W1810062343
PDOA01000055
Alphaproteobacteria
Pseudoroseomonas aestuarii JR1/69-1-13 [PDOA]
2042
2117
+
Ile
GAT
[ENA]
¡û
>W1810684788
QKYU01000056
Alphaproteobacteria
Humitalea rosea DSM 24525 [QKYU]
2115
2190
+
Ile
GAT
[ENA]
¡û
>W1810692357
QLIX01000083
Alphaproteobacteria
Roseicella frigidaeris DB-1506 [QLIX]
626
699
+
Ile
GAT
[ENA]
¡û
>W10119159
ADVL01000363
Alphaproteobacteria
Pseudoroseomonas cervicalis ATCC 49957 [ADVL]
3517
3442
-
Ile
GAT
[ENA]
¡û
>W1511352873
JROR01000004
Alphaproteobacteria
Belnapia sp. F-4-1 [JROR]
145034
144961
-
Ile
GAT
[ENA]
¡û
>W1511352903
JROR01000015
Alphaproteobacteria
Belnapia sp. F-4-1 [JROR]
13247
13174
-
Ile
GAT
[ENA]
¡û
>W1511352910
JROR01000045
Alphaproteobacteria
Belnapia sp. F-4-1 [JROR]
412
339
-
Ile
GAT
[ENA]
¡û
>W11125379
ADVL01000363
Alphaproteobacteria
Pseudoroseomonas cervicalis ATCC 49957 [ADVL]
3517
3442
-
Ile
GAT
[ENA]
¡û
>W121009565
AGEZ01000040
Alphaproteobacteria
Acetobacteraceae bacterium AT-5844 [AGEZ]
2058
2133
+
Ile
GAT
[ENA]
¡û
>W121113837
ALOX01000016
Alphaproteobacteria
Roseomonas sp. B5 [ALOX]
3870
3795
-
Ile
GAT
[ENA]
¡û
>W1610716150
LLWF01000379
Alphaproteobacteria
Roseomonas mucosa [LLWF]
2220
2295
+
Ile
GAT
[ENA]
¡û
>ENV000087
AB276079
Environmental sample from ENV division of INSDC
318
396
+
Ile
GAT
[ENA]
>W1710084291
BDLP01000288
Alphaproteobacteria
Roseomonas sp. TAS13 [BDLP]
1985
2060
+
Ile
GAT
[ENA]
¡û
>W1710567329
FOSQ01000037
Alphaproteobacteria
Falsiroseomonas stagni DSM 19981 [FOSQ]
3789
3716
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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