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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.299575 (32 seq.)
>W131180662
ARNH01000001
Betaproteobacteria
Bordetella sp. FB-8 [ARNH]
750919
750844
-
Ala
TGC
[ENA]
¡û
>C171115887
CP021111
Betaproteobacteria
Bordetella genomosp. 13 AU7206 [CP021111]
4466027
4465952
-
Ala
TGC
-
¡û
>C171115893
CP021111
Betaproteobacteria
Bordetella genomosp. 13 AU7206 [CP021111]
3450491
3450416
-
Ala
TGC
-
¡û
>C171115903
CP021111
Betaproteobacteria
Bordetella genomosp. 13 AU7206 [CP021111]
2447244
2447169
-
Ala
TGC
-
¡û
>WENV180020715
FTDB01000002
[FTDB] metagenome; soil
257
182
-
Ala
TGC
[ENA]
¢þ
>WENV180023928
FTIF01004381
[FTIF] metagenome; soil
13868
13943
+
Ala
TGC
[ENA]
¢þ
>WENV180024167
FTIF01111205
[FTIF] metagenome; soil
64
139
+
Ala
TGC
[ENA]
¢þ
>WENV180024329
FTIG01124418
[FTIG] metagenome; soil
565
640
+
Ala
TGC
[ENA]
¢þ
>WENV180026466
FTIT01394483
[FTIT] metagenome; soil
1386
1461
+
Ala
TGC
[ENA]
¢þ
>WENV180027557
FTIZ01004018
[FTIZ] metagenome; soil
3987
3912
-
Ala
TGC
[ENA]
¢þ
>WENV180030749
FTJN01013412
[FTJN] metagenome; soil
2409
2484
+
Ala
TGC
[ENA]
¢þ
>WENV180032823
FTKD01001486
[FTKD] metagenome; soil
195017
195092
+
Ala
TGC
[ENA]
¢þ
>WENV180032985
FTKD01022022
[FTKD] metagenome; soil
66
141
+
Ala
TGC
[ENA]
¢þ
>WENV180035287
FTKT01079037
[FTKT] metagenome; soil
278
353
+
Ala
TGC
[ENA]
¢þ
>WENV170426428
CEUQ01083582
[CEUQ] marine metagenome genome assembly TARA_124_MIX_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
55
130
+
Ala
TGC
[ENA]
¢þ
>WENV170649664
JRYC01054405
[JRYC] activated sludge metagenome; activated biomass of a common effluent treatment plant treating industrial wastewater
1
76
+
Ala
TGC
[ENA]
¢þ
>WENV170714922
LNFM01115485
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
370
445
+
Ala
TGC
[ENA]
¢þ
>C181058445
CP022115
Betaproteobacteria
Laribacter hongkongensis HLGZ1 [CP022115]
3422468
3422393
-
Ala
TGC
-
¡û
>C181058447
CP022115
Betaproteobacteria
Laribacter hongkongensis HLGZ1 [CP022115]
3376245
3376170
-
Ala
TGC
-
¡û
>C181058454
CP022115
Betaproteobacteria
Laribacter hongkongensis HLGZ1 [CP022115]
2965392
2965317
-
Ala
TGC
-
¡û
>C181058457
CP022115
Betaproteobacteria
Laribacter hongkongensis HLGZ1 [CP022115]
2726957
2726882
-
Ala
TGC
-
¡û
>C181058465
CP022115
Betaproteobacteria
Laribacter hongkongensis HLGZ1 [CP022115]
2536641
2536566
-
Ala
TGC
-
¡û
>C181058469
CP022115
Betaproteobacteria
Laribacter hongkongensis HLGZ1 [CP022115]
2319364
2319289
-
Ala
TGC
-
¡û
>C09107005
CP001154
Betaproteobacteria
Laribacter hongkongensis HLHK9 [CP001154]
225257
225332
+
Ala
TGC
[Ensembl]
¡û
>C09107042
CP001154
Betaproteobacteria
Laribacter hongkongensis HLHK9 [CP001154]
3167596
3167521
-
Ala
TGC
[Ensembl]
¡û
>C09107044
CP001154
Betaproteobacteria
Laribacter hongkongensis HLHK9 [CP001154]
3134410
3134335
-
Ala
TGC
[Ensembl]
¡û
>C09107051
CP001154
Betaproteobacteria
Laribacter hongkongensis HLHK9 [CP001154]
2762829
2762754
-
Ala
TGC
[Ensembl]
¡û
>C09107054
CP001154
Betaproteobacteria
Laribacter hongkongensis HLHK9 [CP001154]
2649970
2649895
-
Ala
TGC
[Ensembl]
¡û
>C09107062
CP001154
Betaproteobacteria
Laribacter hongkongensis HLHK9 [CP001154]
2421319
2421244
-
Ala
TGC
[Ensembl]
¡û
>C09107066
CP001154
Betaproteobacteria
Laribacter hongkongensis HLHK9 [CP001154]
2207231
2207156
-
Ala
TGC
[Ensembl]
¡û
>W1610459351
FKIF01000002
Betaproteobacteria
Bordetella ansorpii [FKIF]
588530
588605
+
Ala
TGC
[ENA]
¡û
>W1710458979
FKIF01000002
Betaproteobacteria
Bordetella ansorpii [FKIF]
588530
588605
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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